PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028548961.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 603aa    MW: 69173.5 Da    PI: 6.1818
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028548961.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS364.61.4e-1112315993374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lLl+cA+ v+ gd+ +a a+L+++++++s +gd++qR+a+yf+ +L+arl++++se+y++l  ++ +    +++l+a++++   +P+ k+s+  
  XP_028548961.1 231 TLLLQCAQTVAIGDNPRAYAMLKQIRQHSSLHGDAFQRVAHYFADGLEARLSGTGSEVYRSLVFKRRT---IKDVLNAYQFYLASCPFKKVSYHF 322
                     79**************************************************************9999...9*********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aNq+Il+ +++++rvHi+Df+i  G+QWp Ll+ L+ Rp++pp+lRiTg++ p++g   +e++ etg+rLa++Ae++gvpfe++  +a +++d++
  XP_028548961.1 323 ANQTILDTIQNATRVHIVDFGIYFGFQWPVLLKLLSLRPGEPPKLRITGIDIPQPGfrPTEMIDETGRRLADYAEQFGVPFEYHG-IAAKFDDIN 416
                     *******************************************************9*9***************************.799****** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +eeL +k++E+l+Vn+ ++lh+  de+v  + +rd+vL+++++++P v+v v  +  ++++ ++ r+ eal++ysalfd+l+++ prese r +v
  XP_028548961.1 417 VEELCIKEEETLVVNCLFRLHSPADETVVENCPRDKVLNTIRKMNPAVFVNVVLNGTYGAPFYMFRVREALYHYSALFDMLDSTTPRESERRLMV 511
                     ************************99999999*************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     Er l g+ + n+++ceg e rer et+++W+ r  +aGF+ vp s++ +k++k  +r ++ + ++++e+  +l+ gWk+r L  +SaW+
  XP_028548961.1 512 ERNLYGPLLINAISCEGME-RERPETYKQWQVRCLRAGFEMVPNSKDFVKKVKDCVRSIYHKDFTMDEDGRWLLTGWKGRLLCGLSAWK 599
                     *******************.9***************************************888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    
MLMEEDADDK YVMLQSHPDL EATEKPFYEL IAKKYPPSPD RPSLYSSPSP ESSGDNQGNN  60
KVIRGIDFFQ ANSEIAEYQN WDIYPFHQSQ EDQFTDHFFK NLPASEYNRG VEEAKKFLPS  120
EHKLVVGVGE ADLSLPQELI ERAGRKQNRH SDASGYDEAT RTKQSAFSSE DSMVSLEALD  180
EALLCYGDKF PKVVKTLREN IYKEASKYPK NTKPKEVGNK KTSEEEADIN TLLLQCAQTV  240
AIGDNPRAYA MLKQIRQHSS LHGDAFQRVA HYFADGLEAR LSGTGSEVYR SLVFKRRTIK  300
DVLNAYQFYL ASCPFKKVSY HFANQTILDT IQNATRVHIV DFGIYFGFQW PVLLKLLSLR  360
PGEPPKLRIT GIDIPQPGFR PTEMIDETGR RLADYAEQFG VPFEYHGIAA KFDDINVEEL  420
CIKEEETLVV NCLFRLHSPA DETVVENCPR DKVLNTIRKM NPAVFVNVVL NGTYGAPFYM  480
FRVREALYHY SALFDMLDST TPRESERRLM VERNLYGPLL INAISCEGME RERPETYKQW  540
QVRCLRAGFE MVPNSKDFVK KVKDCVRSIY HKDFTMDEDG RWLLTGWKGR LLCGLSAWKP  600
LCF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-155GRAS family protein