PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028548914.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 144aa MW: 16808.2 Da PI: 6.7038 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.5 | 6.3e-22 | 12 | 58 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k ien+s r v fskRr+g++KKAeELSvL +a+vav+ fs+ gk+y XP_028548914.1 12 KLIENSSSRMVCFSKRRKGLFKKAEELSVLSGARVAVLAFSQAGKMY 58 569*******************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence |
MIGKGRKKVE NKLIENSSSR MVCFSKRRKG LFKKAEELSV LSGARVAVLA FSQAGKMYCS 60 DAQTLNSLLD PQFNISSEKE AENYWELDYL EALTGNVRAF WYNKPDVQKM DYEELQKFER 120 AILEYEQMQL AKNYGNLFEY EQMQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 4e-18 | MIKC_MADS family protein |