PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028548831.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 632aa    MW: 70213.4 Da    PI: 6.5524
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028548831.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS188.35e-582285012280
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     ++lL+e+Ae v+sg++  aq++Larl+++   p+g+p  R a+y++eAL + l+r ++++      + +s+ +   +l+a+k+f e+sPilkf  
  XP_028548831.1 228 IDLLFEAAELVESGNNISAQRILARLNHQvPPPYGKPYIRSAFYIKEALLTILNRGGEQCG----FRLASPLDILLKLSAYKAFAEISPILKFIS 318
                     689*************************9788999********************777777....44444455899******************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +   + Ile+++g++ +HiiDfd++ G QWpaLlq+L++R+    g p +lRiT++ s++s+++ el+ ++e+L+ fA++l+vpfe n l    +
  XP_028548831.1 319 FSSTELILEELAGANIIHIIDFDVGVGSQWPALLQELSERRsavTGVPlQLRITAFFSMSSHHQLELHLIQENLNFFAANLNVPFELNYL---PI 410
                     **************************************99977745555****************************************9...66 PP

            GRAS 187 edleleeL...rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpr 277
                     e++++ ++   + ++gE++aVn+++   + +    s    ++++L l+k+lsPk+++ ++   d ++ sF +++l++++  ++l+ds+ e+++++
  XP_028548831.1 411 ESFDPAAIissSSHSGEVIAVNFAFGFCSHH---IS----THALLLLIKQLSPKILISANLGYDWGDLSFSHHVLHSFQSSAVLLDSIeESGVSP 498
                     666666662215555**********776665...33....467*********************************************6666655 PP

            GRAS 278 ese 280
                     e  
  XP_028548831.1 499 EIT 501
                     544 PP
2GRAS54.42.5e-17551631290374
            GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     l++ i+     + + r    e++  Wr+ +++aGF p+++s+++ + a++ll+k +++g++ve+++++++l W++ ++ +vSaWr
  XP_028548831.1 551 LRPTIE----SSIFGRYRTGEKFLPWRSLFTSAGFVPMQFSNFTKTLADCLLKKSQVRGFEVEKRQAAMMLSWQQGEIAVVSAWR 631
                     444444....44445555699***************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    
MKGMLFHALE DEVFFSNWTR KSSSKEGGEP RSVLDNRRSP SSPTSTSTPT CFDTTGVAAV  60
FDVPAHKCQQ VSASSNGEWS SELKPITMSL GSVEGWDSML LEPPAIETAK LRSLHSFSRW  120
FMVDSNAGAR LEGTGIGLEI LDPEFSFQHI GGMRGDGSII PVVPDTPSNL LSNSGFTNNC  180
LKAPAFANSN FIINQNPHEN YMPKTYLGAC AMPIEYPNES AWLQHAVIDL LFEAAELVES  240
GNNISAQRIL ARLNHQVPPP YGKPYIRSAF YIKEALLTIL NRGGEQCGFR LASPLDILLK  300
LSAYKAFAEI SPILKFISFS STELILEELA GANIIHIIDF DVGVGSQWPA LLQELSERRS  360
AVTGVPLQLR ITAFFSMSSH HQLELHLIQE NLNFFAANLN VPFELNYLPI ESFDPAAIIS  420
SSSHSGEVIA VNFAFGFCSH HISTHALLLL IKQLSPKILI SANLGYDWGD LSFSHHVLHS  480
FQSSAVLLDS IEESGVSPEI TDRIEGYLLR PWFKIAQYEA RLCAIPVKNA SMLTPRVFFM  540
RLTPQLVKHW LRPTIESSIF GRYRTGEKFL PWRSLFTSAG FVPMQFSNFT KTLADCLLKK  600
SQVRGFEVEK RQAAMMLSWQ QGEIAVVSAW RC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.12e-73GRAS family protein