PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028548803.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Nin-like

Protein Properties

Length: 870aa MW: 96836.5 Da PI: 5.672

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028548803.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	78.9	5.4e-25	572	621	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek isle l++yF++++kdAAk+L vc+T++KriCRq+GI+RWP+Rki+++ XP_028548803.1 572 EKIISLEILQQYFAGSLKDAAKSL-VCPTTMKRICRQHGISRWPSRKINKV 621 789*******************.**********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 870 aa Download sequence
MSEFVVAEEA DEKCELPPME TIDLVDLDTA PTSDSWNFYS AAAFFSNPPS PLLLSPSLPS 60 RSLSHLAVSF PQPTSPLWIF DDETAEIAGN FDSEKENDNL QIEKIRTFPR TPIKEVSDIS 120 YLIKERMKQA LRYFKEWTNQ RVLVQVWVPV RNGDRYVLTT SEQPFELDRD TNGLLQYRNV 180 SLMYLFSVDE NNDAALGLPG RVFKLKKPEW TPNVQYYSNK EYPRLSHALL YNIRGSLGLP 240 VFDPSRQSCV GVIELIMTSE MVNYAPEVDK VCRALEAVNL KSSEILEHQS IQACDKEHRA 300 ALAELLQILT IVCEAQKLPL AQTWVPCQHG TVLAQHDGSR KSISTSNGIC MGQVCMSTTD 360 AAFYVVEAQM WGFRVACSEH HLQKGQGVVG RAFSVKRPCF CRDVTKFCKM EYPLVHYAQM 420 FGLGSCFALC FGSSHSGDDI YVVEFFLPSD CKDPIKQDAL LESISTLVKH SLRSLKVITG 480 AEVEGLPLGK IDMITYANNE MKQIQYALPK LNTLEDFDEH ENKRIAEHNS PEQHLELSIN 540 SEKNTTLPGK GSITAPAIIT NKVAGRKRGK TEKIISLEIL QQYFAGSLKD AAKSLVCPTT 600 MKRICRQHGI SRWPSRKINK VNRSISKLKQ VIESVQVAEV ALNLNPLVCP LPVAPGSISF 660 PVHSDSDSIA RDEGTPHFKA LEEPVGGHTS SNTKSSSDGD LKTPVSQGSN DASLGREACG 720 IEKPFSRNSK QFVSAKDQNT VALFSPANII VEPEHAVADI LVEDSASSKL ARNTPSTAIS 780 EPKTVIIKAC YKEDIIRFRL AYEAGIVALN EEIGKRLMLE IGTFVIKYLD DDYDWVKLSC 840 EEDLQECLEI SAMSGSSVIR LSIQDVCNER

Sequence ? help Back to Top

Protein Sequence Length: 870 aa Download sequence

MSEFVVAEEA DEKCELPPME TIDLVDLDTA PTSDSWNFYS AAAFFSNPPS PLLLSPSLPS  60
RSLSHLAVSF PQPTSPLWIF DDETAEIAGN FDSEKENDNL QIEKIRTFPR TPIKEVSDIS  120
YLIKERMKQA LRYFKEWTNQ RVLVQVWVPV RNGDRYVLTT SEQPFELDRD TNGLLQYRNV  180
SLMYLFSVDE NNDAALGLPG RVFKLKKPEW TPNVQYYSNK EYPRLSHALL YNIRGSLGLP  240
VFDPSRQSCV GVIELIMTSE MVNYAPEVDK VCRALEAVNL KSSEILEHQS IQACDKEHRA  300
ALAELLQILT IVCEAQKLPL AQTWVPCQHG TVLAQHDGSR KSISTSNGIC MGQVCMSTTD  360
AAFYVVEAQM WGFRVACSEH HLQKGQGVVG RAFSVKRPCF CRDVTKFCKM EYPLVHYAQM  420
FGLGSCFALC FGSSHSGDDI YVVEFFLPSD CKDPIKQDAL LESISTLVKH SLRSLKVITG  480
AEVEGLPLGK IDMITYANNE MKQIQYALPK LNTLEDFDEH ENKRIAEHNS PEQHLELSIN  540
SEKNTTLPGK GSITAPAIIT NKVAGRKRGK TEKIISLEIL QQYFAGSLKD AAKSLVCPTT  600
MKRICRQHGI SRWPSRKINK VNRSISKLKQ VIESVQVAEV ALNLNPLVCP LPVAPGSISF  660
PVHSDSDSIA RDEGTPHFKA LEEPVGGHTS SNTKSSSDGD LKTPVSQGSN DASLGREACG  720
IEKPFSRNSK QFVSAKDQNT VALFSPANII VEPEHAVADI LVEDSASSKL ARNTPSTAIS  780
EPKTVIIKAC YKEDIIRFRL AYEAGIVALN EEIGKRLMLE IGTFVIKYLD DDYDWVKLSC  840
EEDLQECLEI SAMSGSSVIR LSIQDVCNER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein