PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_028548775.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 585aa MW: 65017.2 Da PI: 4.8192 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 454.5 | 6.8e-139 | 216 | 585 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++lL++cA ++s+g+ e+aqa++ +l+++++ +gdp qRlaay++e+Laar+++s+++lykal+++e + ++++l+a+++++e++P++kf+++ XP_028548775.1 216 KQLLFDCASVLSDGNVEEAQAMIIELRQMVAIQGDPPQRLAAYLVEGLAARIVSSGHGLYKALKCKEPP---TTDQLSAMQILFEICPCFKFGFM 307 689*****************************************************************9...89********************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 +aN aI ea++ eervHi+Dfdi+qG Q+++L+qaL++R+ +pp+lRiTgv++pes+ le +g+rL+k+Aee gvpf+f++ +a +++d+ XP_028548775.1 308 AANGAIAEAFKDEERVHILDFDINQGSQYITLIQALSARQTKPPHLRITGVDDPESVqrTIGGLEVIGQRLEKLAEEAGVPFKFQA-IAAKTADV 401 *******************************************************99777789***********************.6999**** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 ++++L+++pgEal+Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++F+ rf+e +yysa+f+sl+a+lpres +r++ XP_028548775.1 402 TPSMLDCRPGEALVVNFAFQLHHMPDESVSTVNQRDRLLRMVKSLNPKLVTVVEQDVNTNTAPFFPRFVEVYNYYSAVFESLDATLPRESPDRMN 496 *********************************************************************************************** PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 vEr++l+r+ivn+vacega+r+er e ++kWr+r+++aGF + pls++++ +++ll+ + ++ y+++ee+g+l++gW+d+ Lv++SaW+ XP_028548775.1 497 VERQCLARDIVNIVACEGADRIERYEAAGKWRARMTMAGFVSCPLSSYVNGAIRSLLKSYCDR-YKIKEENGALYFGWEDKILVVASAWK 585 *************************************************************66.*************************8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 585 aa Download sequence |
MSLMSSADSS TSCSEPGCYG HKSNDSTGLS SQIFTSDKQM LHYGLPSYQS NIYGQQYFTN 60 ASTGLNPLNS IHLSSSVHGN LHRPQAFSGT YQLIGNGRSS VIQDNPYNAC FAAVRHQTSS 120 VSNNYQQAAR SLLESQSPEP EMDFEEIDIT LKLQELERAL LSENDEDFTD LGQEMFMDED 180 WTESIKSLMT PNSPKESSSD SNISSISSNR EMRTSKQLLF DCASVLSDGN VEEAQAMIIE 240 LRQMVAIQGD PPQRLAAYLV EGLAARIVSS GHGLYKALKC KEPPTTDQLS AMQILFEICP 300 CFKFGFMAAN GAIAEAFKDE ERVHILDFDI NQGSQYITLI QALSARQTKP PHLRITGVDD 360 PESVQRTIGG LEVIGQRLEK LAEEAGVPFK FQAIAAKTAD VTPSMLDCRP GEALVVNFAF 420 QLHHMPDESV STVNQRDRLL RMVKSLNPKL VTVVEQDVNT NTAPFFPRFV EVYNYYSAVF 480 ESLDATLPRE SPDRMNVERQ CLARDIVNIV ACEGADRIER YEAAGKWRAR MTMAGFVSCP 540 LSSYVNGAIR SLLKSYCDRY KIKEENGALY FGWEDKILVV ASAWK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G21450.1 | 0.0 | GRAS family protein |