PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028548774.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HD-ZIP

Protein Properties

Length: 277aa MW: 31025.1 Da PI: 5.1831

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028548774.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.2	2.1e-16	153	207	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ + + LAk+l+L rq+ vWFqNrRa+ k XP_028548774.1 153 RKKLRLSKEQSAFLEESFKEQNTLNPKLKFVLAKQLNLRPRQIEVWFQNRRARSK 207 678899***********************************************98 PP
2	HD-ZIP_I/II	117.1	1e-37	153	242	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+++LEesF+e+++L+p+ K la++L+l+prq++vWFqnrRAR k+kq+E d+e+Lkr+++ l+een+rL+kev+eLr ++ XP_028548774.1 153 RKKLRLSKEQSAFLEESFKEQNTLNPKLKFVLAKQLNLRPRQIEVWFQNRRARSKLKQMEIDCEFLKRRCEMLREENSRLHKEVTELR-AI 242 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence
MELTLSLGES TEKALEEVAG DGGDRQSGFC MGLGFAQERR VEVGEESRGG YEGWLKVEEG 60 GWSVDPPVQL NLLPLAPIPR LDSTQLALPW STEDTVNLET PPVEEEDERA AISSSPIRMV 120 SSLHMNFASG GGGVAVERAS SRGSDEEEND KGRKKLRLSK EQSAFLEESF KEQNTLNPKL 180 KFVLAKQLNL RPRQIEVWFQ NRRARSKLKQ MEIDCEFLKR RCEMLREENS RLHKEVTELR 240 AIKSFHIQVP PTTLSICPSC ERVSPPASPP QSPPTPR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	202	210	RRARSKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	1e-59	HD-ZIP family protein