PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028548729.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family WRKY
Protein Properties Length: 314aa    MW: 35015.4 Da    PI: 6.8384
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028548729.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.41.3e-27125186159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK++ g++fpr+YYrCt++   gC ++k+v+rs+ed  ++++tY+g H+++
  XP_028548729.1 125 LDDGYSWRKYGQKDILGAKFPRGYYRCTYRhthGCLATKQVQRSSEDDFLFDVTYRGVHTCN 186
                     59**************************998999**************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
MESCLVTSDM NMLINVLNQG NEHMRELQAQ LDQPFSAEAC KLLATKAKSA LSSAISLAKL  60
LEPSCQRPTG FVDSPPSASD SPKSDSSDKV FKELERREMC KKRKTLPRWS RQVRACSNSA  120
MEGPLDDGYS WRKYGQKDIL GAKFPRGYYR CTYRHTHGCL ATKQVQRSSE DDFLFDVTYR  180
GVHTCNHCLQ RTPTPSPKEE NLIQNQASKP QAHPHQQQLL EQLKTGLRVK TEASMPENQL  240
MGNNSTTTSA ESNYFSLSPC GVNNFAGGLN LQGFDTEIAE IISAAASTTN SPMLGMDFPM  300
EQIEFETDFP FGFC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.11e-44WRKY family protein