PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028548691.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 234aa MW: 26523.6 Da PI: 8.4775 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 73.5 | 1.7e-23 | 19 | 67 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krie + nrqv fskRr+g++KKA+EL++LC+aeva+i+fs gk y + XP_028548691.1 19 KRIEKEANRQVCFSKRRQGLFKKANELCTLCGAEVAIIVFSIAGKPYSF 67 79******************************************98877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence |
MNPIETRKKG KGRIKIEIKR IEKEANRQVC FSKRRQGLFK KANELCTLCG AEVAIIVFSI 60 AGKPYSFGHP SVDHVLQRFT NVPFTSKARS AATTSFDPMN PMNEELAYLR KKLEEERNKS 120 RALKVAQKAL SPVSNSFWWD INLSLMGMEE LKEYEKVLLE LQAIISQLAQ QSCCHAPELV 180 IRQIDGSSMA ELAQQSCCHA PELVMRQIDG SSMAEVGEAN YLLLQQQWQN YELA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-28 | M-type_MADS family protein |