PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028548491.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family B3
Protein Properties Length: 339aa    MW: 37265.6 Da    PI: 8.4259
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028548491.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.81.4e-3068171198
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+kv tpsdv+k++rlv+pk++ae++    ++ + ++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F +  g+  +
  XP_028548491.1  68 FEKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTHDKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGvGDaAR 162
                     99***************************9666668899***********************************************955466677 PP

                     E..EEEEE- CS
              B3  90 felvvkvfr 98 
                      +l++ + r
  XP_028548491.1 163 DRLFIDWKR 171
                     777777666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MEISEARKDS SKCFAEVEEE EHQFLPPVSS TSPSSSSAFV VHWTDGSEPS PSSTTEPAAA  60
TVEKEHMFEK VVTPSDVGKL NRLVIPKQHA EKYFPLDSST HDKGLLLNFE DRNGKPWRFR  120
YSYWNSSQSY VMTKGWSRFV KEKRLDAGDT VSFGRGVGDA ARDRLFIDWK RRPDPHYDPP  180
ASLRIPRFAY HPTASHHPYL PFPRSSTVPW ATSRFFAPSS LATNYLYFRS PQPGPQPDRG  240
PTIPMVLDSF PVGQAKASGA TKRVRLFGVN LEPPRDAEDD TDGAAGLLKL QLRGSLPSHE  300
LRLGGGGGGG SVPSSSSSSS SRGGKDGLII NSPSLDLDM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.17e-70B3 family protein