PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028548328.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 544aa    MW: 61471.5 Da    PI: 6.6421
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028548328.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS426.12.9e-1301755432373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL +cAea+++g  ++ ++l+++  + +s +gdp+qR+ ay++e+L ar   s++++y+al++++ +   s+e l+ ++++++++P++kf+h+
  XP_028548328.1 175 KHLLARCAEALDDGRVNEFETLVKEAAKFVSINGDPIQRVGAYMLEGLVARHEASGTKIYRALRCRQPE---SKELLSHMRILYDICPYFKFGHM 266
                     79******************************************************************9...9999******************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +aN aI e++ +e+r+HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+  + + l+ +g++L+++ +++++p+ef+ l +    ++
  XP_028548328.1 267 AANGAIAESLRNEDRIHIIDFQIAQGTQWVTLIQALAARPRGPPHVRITGIDDPVSEfaRGDGLQLVGKNLSEMSKKFNIPLEFHGL-SVYGPQV 360
                     ******************************************************99999***************************5.888999* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     + ++L+++pgEalaVn+ lqlh+++desv+++++rd +L++vkslsPkvv++veqe+++n+++Fl rf+e+++yy ++f+s++++lpr+s++ri 
  XP_028548328.1 361 TRDMLEIQPGEALAVNFTLQLHHTPDESVNVNNPRDGLLRMVKSLSPKVVTLVEQESNTNTTPFLMRFSETFDYYCVMFESIDETLPRDSKKRID 455
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     vE+++l+++ivn++aceg+er+erhe l+kWr+rl++aGFk+ pls+++++ +k+ll  ++ d y++ e++g+ +lgW++r+L+s+SaW
  XP_028548328.1 456 VEQHCLAKDIVNIIACEGEERIERHELLGKWRSRLTMAGFKSFPLSSYVNSVIKTLLGYYS-DKYTLVEKDGATLLGWNNRNLISASAW 543
                     *********************************************************9999.55************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    
MDSHRFYRYG SQLTSANHLS YEFTTATSYS EWTTGSLKLD LGNSPNSTLS NQFYSDSSIP  60
SNSKEGHIST ITGTNCKQTE VNFAENYASC SRSMKHALQE IESVLMSPDH NEAATSTSAE  120
FEEIKPKVLT KQRSRPERHH SQDNIASTPQ LQYSYSLPEK RPRETMEALP MMDIKHLLAR  180
CAEALDDGRV NEFETLVKEA AKFVSINGDP IQRVGAYMLE GLVARHEASG TKIYRALRCR  240
QPESKELLSH MRILYDICPY FKFGHMAANG AIAESLRNED RIHIIDFQIA QGTQWVTLIQ  300
ALAARPRGPP HVRITGIDDP VSEFARGDGL QLVGKNLSEM SKKFNIPLEF HGLSVYGPQV  360
TRDMLEIQPG EALAVNFTLQ LHHTPDESVN VNNPRDGLLR MVKSLSPKVV TLVEQESNTN  420
TTPFLMRFSE TFDYYCVMFE SIDETLPRDS KKRIDVEQHC LAKDIVNIIA CEGEERIERH  480
ELLGKWRSRL TMAGFKSFPL SSYVNSVIKT LLGYYSDKYT LVEKDGATLL GWNNRNLISA  540
SAWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.11e-173GRAS family protein