PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028548299.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 799aa MW: 91769.2 Da PI: 6.6063

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028548299.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.9	6.4e-27	71	158	3	89
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 Y +YA++vGFsvr+sks++s+++++i++r+fvCskeg++ ++ + + k++r+ra+ r gC+a+++v +++ g+w+vtkl++eHnH + XP_028548299.1 71 YMSYASRVGFSVRISKSRRSRNDESIIMRRFVCSKEGFHMKKGNYeDGKKKRKRATIREGCNAMIEVIQKYYGRWVVTKLVKEHNHVV 158 99**********************************999988756788999*******************************76 PP
2	FAR1	78.3	1.5e-24	192	281	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA ++GF+vr++ s++s+r++++++r+fvC+keg++ e++ ++k++r+r+ tr gCka+++v k+++++w v+kl+++H+H+l+ XP_028548299.1 192 FYYAYAVRIGFDVRIRLSRRSTRDESFVMRRFVCTKEGFTPFEETFdESKKKRNRTPTREGCKAMFEVIKKDSDRWIVSKLVTDHTHDLV 281 9************************************987666547888999*******************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 799 aa Download sequence
MESTSSEDEG SLRDNHVDLN NENMEHHLAM EVSSHFNDSE SLLPSHEEAS ENIEPFIGME 60 FESEEAAKES YMSYASRVGF SVRISKSRRS RNDESIIMRR FVCSKEGFHM KKGNYEDGKK 120 KRKRATIREG CNAMIEVIQK YYGRWVVTKL VKEHNHVVAA PSRVRYVAPE EYAGMEPFVG 180 MEFSSHEAAQ MFYYAYAVRI GFDVRIRLSR RSTRDESFVM RRFVCTKEGF TPFEETFDES 240 KKKRNRTPTR EGCKAMFEVI KKDSDRWIVS KLVTDHTHDL VIAPGKVHYI QSQSEVVVLA 300 KSGAVNLEKS AALTSSKPSF GDKFVGLDSL SSNDQGSRTD LTNTYHNAFG FEETQFLLES 360 FKKMQAESPA FFYAFQVDKS NRLINVFWAD AKAKMAYYCF GDAVTVDTSC KENKSMMPFV 420 MFTGINHHCQ SVAFGFALLT DETEASFIWL FENWLVAMCG RTPISLITDH HEAMTAAISS 480 VFPEARHRLS RDHILRKCRE KLSNLYFMLG SLEASFEIEF LKCIDEPETV QVFELQWKSI 540 LDKYDRGENS WLQCLHNTRH KWAPVYHKDT FTADISLAEK PESLSTFFEK YFNRKTSLQF 600 FISILDQAMA VWYEREALED FASSCTRPTL KTPSSMLKQA AEIYTRTVFD VFQDEFVESL 660 GYFADRIEDG VISKYNVTKV EDVCACIVTH DSSEERTSCS CCKFERSGIL CRHILRVYLT 720 VDVRVLPEHY ILKRWTKDAK NGFVLDECAR YSDLVCNVIR FAKEGSTSLD AFNIAKQALQ 780 IAFSEVLAAK KDIASRCAM

Sequence ? help Back to Top

Protein Sequence Length: 799 aa Download sequence

MESTSSEDEG SLRDNHVDLN NENMEHHLAM EVSSHFNDSE SLLPSHEEAS ENIEPFIGME  60
FESEEAAKES YMSYASRVGF SVRISKSRRS RNDESIIMRR FVCSKEGFHM KKGNYEDGKK  120
KRKRATIREG CNAMIEVIQK YYGRWVVTKL VKEHNHVVAA PSRVRYVAPE EYAGMEPFVG  180
MEFSSHEAAQ MFYYAYAVRI GFDVRIRLSR RSTRDESFVM RRFVCTKEGF TPFEETFDES  240
KKKRNRTPTR EGCKAMFEVI KKDSDRWIVS KLVTDHTHDL VIAPGKVHYI QSQSEVVVLA  300
KSGAVNLEKS AALTSSKPSF GDKFVGLDSL SSNDQGSRTD LTNTYHNAFG FEETQFLLES  360
FKKMQAESPA FFYAFQVDKS NRLINVFWAD AKAKMAYYCF GDAVTVDTSC KENKSMMPFV  420
MFTGINHHCQ SVAFGFALLT DETEASFIWL FENWLVAMCG RTPISLITDH HEAMTAAISS  480
VFPEARHRLS RDHILRKCRE KLSNLYFMLG SLEASFEIEF LKCIDEPETV QVFELQWKSI  540
LDKYDRGENS WLQCLHNTRH KWAPVYHKDT FTADISLAEK PESLSTFFEK YFNRKTSLQF  600
FISILDQAMA VWYEREALED FASSCTRPTL KTPSSMLKQA AEIYTRTVFD VFQDEFVESL  660
GYFADRIEDG VISKYNVTKV EDVCACIVTH DSSEERTSCS CCKFERSGIL CRHILRVYLT  720
VDVRVLPEHY ILKRWTKDAK NGFVLDECAR YSDLVCNVIR FAKEGSTSLD AFNIAKQALQ  780
IAFSEVLAAK KDIASRCAM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-151	FAR1 family protein