PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028547959.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NAC

Protein Properties

Length: 667aa MW: 76330.7 Da PI: 6.9406

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028547959.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108	1.1e-33	65	139	53	128
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ ewyfFs+rd+ky++g+r+nrat++gyWkatgkd++v s ++++vg+kktLv+y+grap+g++tdWvmheyrl XP_028547959.1 65 SKDLEWYFFSPRDRKYPNGSRTNRATQAGYWKATGKDRKVNS-QKRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 139 4567************************************.9999*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence
MKRDAQINKL QKSKAAVTIN SKPSYNFLIS TKHQIKHNDE LHFSYLTNLI YFFIDILSEK 60 SFLPSKDLEW YFFSPRDRKY PNGSRTNRAT QAGYWKATGK DRKVNSQKRA VGMKKTLVYY 120 RGRAPHGSRT DWVMHEYRLD ERECEIANGL QDAYALCRVF KKSEPGPKII EHYGAPCEEH 180 KQWMLNEHSS TMTDLSPDGI GDYLESSNYH FQPSDCPQTM IQSSFEASNS WMQFLTDEAL 240 SSTTATFQNT SFSYVPSKVD VALECARLQQ RFTMPSLEVE DYSLLHMADP TILHSTNYSQ 300 NTTHGEDILH ELLSVASASQ ELINNPNFHE DMWAARITPH FNESFSTLIE SGDAVGSSKF 360 IAKSCGLEEQ STFVDISELE DEFKEQTKGK NLRDVKKLQE NLLEMNKEVQ KKDCSSNPHT 420 EHICDARAET NQGNFTYEST EIDDKPIYSQ SQEDNFSIGF INIQKDFNQD EHHHLDNAGS 480 PSFDVYHEMI QFNQGLLMSS QTVSKTFFHH IAPANKINIH LNPINFMVDK YESSERARSS 540 VSFFENFKNF FCNKLKKGSI FGRGGANGML GLIEVLLASS FYHGGLLEQS NLSREDMPSR 600 VAAIQAGGIK LTSYDGRKKA ENMKRMKWND GKKFWFPKIR GKSISRMLLN GNLLPWVSML 660 QPSHHSQ

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence

MKRDAQINKL QKSKAAVTIN SKPSYNFLIS TKHQIKHNDE LHFSYLTNLI YFFIDILSEK  60
SFLPSKDLEW YFFSPRDRKY PNGSRTNRAT QAGYWKATGK DRKVNSQKRA VGMKKTLVYY  120
RGRAPHGSRT DWVMHEYRLD ERECEIANGL QDAYALCRVF KKSEPGPKII EHYGAPCEEH  180
KQWMLNEHSS TMTDLSPDGI GDYLESSNYH FQPSDCPQTM IQSSFEASNS WMQFLTDEAL  240
SSTTATFQNT SFSYVPSKVD VALECARLQQ RFTMPSLEVE DYSLLHMADP TILHSTNYSQ  300
NTTHGEDILH ELLSVASASQ ELINNPNFHE DMWAARITPH FNESFSTLIE SGDAVGSSKF  360
IAKSCGLEEQ STFVDISELE DEFKEQTKGK NLRDVKKLQE NLLEMNKEVQ KKDCSSNPHT  420
EHICDARAET NQGNFTYEST EIDDKPIYSQ SQEDNFSIGF INIQKDFNQD EHHHLDNAGS  480
PSFDVYHEMI QFNQGLLMSS QTVSKTFFHH IAPANKINIH LNPINFMVDK YESSERARSS  540
VSFFENFKNF FCNKLKKGSI FGRGGANGML GLIEVLLASS FYHGGLLEQS NLSREDMPSR  600
VAAIQAGGIK LTSYDGRKKA ENMKRMKWND GKKFWFPKIR GKSISRMLLN GNLLPWVSML  660
QPSHHSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	8e-87	NAC family protein