PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028547899.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

G2-like

Protein Properties

Length: 461aa MW: 52742.4 Da PI: 5.8369

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028547899.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.9	3.5e-31	113	166	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR XP_028547899.1 113 PRLRWTPELHLSFVHAVERLGGHERATPKLVLQMMNVRGLSIAHVKSHLQMYRG 166 8****************************************************5 PP
2	Myb_DNA-binding	50.5	4.7e-16	114	165	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+e+++ +v+av++lGg+ t+k++ ++m+ g++ ++ks++q+y+ XP_028547899.1 114 RLRWTPELHLSFVHAVERLGGHeraTPKLVLQMMNvRGLSIAHVKSHLQMYR 165 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MRGEKSIEVV EIEDDEEQKN ETSEGISCRK KFQLELNLNE EVMEEREQED DEDNGSTTEV 60 REEGGGESCS NNNSEEDGNN NDGDSSKSME EDGEENRDRR SAAVRQYVRS KLPRLRWTPE 120 LHLSFVHAVE RLGGHERATP KLVLQMMNVR GLSIAHVKSH LQMYRGKKLD SSGQDRSIFS 180 SGLSTFDAHL RREMFYQRAA GSCQPLRMEN GGLLPSRYIH EAERFYSLLR QSQAQRSFEF 240 NESNFRHQQQ MIVRSSSIKD LNCKKDERYL PLQRSRSFEW IGGCTHQQLS QTLQINSSSN 300 SSPNFSMNGT SSYFSKINQY SGHDPLTKDE LDQPHLTRSF PFQDQKSSKN STKIDKSIEN 360 IEEISTDAKK MRFTRENNGI PELQLSLMPS SIDHKETNTM NIESRDESEL SLSLSPPTRR 420 AINKSFKMQG NIMSSEKDFL KIGSSKMSSL FLSASDIAMS Y

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MRGEKSIEVV EIEDDEEQKN ETSEGISCRK KFQLELNLNE EVMEEREQED DEDNGSTTEV  60
REEGGGESCS NNNSEEDGNN NDGDSSKSME EDGEENRDRR SAAVRQYVRS KLPRLRWTPE  120
LHLSFVHAVE RLGGHERATP KLVLQMMNVR GLSIAHVKSH LQMYRGKKLD SSGQDRSIFS  180
SGLSTFDAHL RREMFYQRAA GSCQPLRMEN GGLLPSRYIH EAERFYSLLR QSQAQRSFEF  240
NESNFRHQQQ MIVRSSSIKD LNCKKDERYL PLQRSRSFEW IGGCTHQQLS QTLQINSSSN  300
SSPNFSMNGT SSYFSKINQY SGHDPLTKDE LDQPHLTRSF PFQDQKSSKN STKIDKSIEN  360
IEEISTDAKK MRFTRENNGI PELQLSLMPS SIDHKETNTM NIESRDESEL SLSLSPPTRR  420
AINKSFKMQG NIMSSEKDFL KIGSSKMSSL FLSASDIAMS Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-34	G2-like family protein