PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028547659.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB
Protein Properties Length: 277aa    MW: 31589.6 Da    PI: 6.1212
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028547659.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.8e-181360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+lv++++ +G g+W+++++  g+ R++k+c++rw +yl
   XP_028547659.1 13 RGLWSPEEDEKLVRYINTHGHGCWSSVPKQAGLQRCGKSCRLRWINYL 60
                     788*******************************************97 PP
2Myb_DNA-binding513.4e-1666109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+ E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
   XP_028547659.1  66 RGSFTEHEERVIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                      89********************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    
MGHHCCSRQK VKRGLWSPEE DEKLVRYINT HGHGCWSSVP KQAGLQRCGK SCRLRWINYL  60
RPDLKRGSFT EHEERVIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPKTHNLMPK TSSNALSLHD SMAILPTFQY EDPNVLMSFK ENVSQEYNIS TSSSSLDHAN  180
IMQISPNQPD FIDDHCCVWT TTPLEEAMFV DQESKQNGGR QGQQGEVQCM GEKGDQFNEV  240
MINGDASFDL ELMESELMPC GSVFCGDNSI EQLQWEC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.12e-84MYB family protein