PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028547576.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | ERF | ||||||||
Protein Properties | Length: 262aa MW: 29157.6 Da PI: 6.5143 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.8 | 1.1e-17 | 61 | 111 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIr+p+ r r +lg++ t +Aa a+++a+++l+g XP_028547576.1 61 CKYRGVRQRT-WGKWVAEIREPR----RgCRLWLGTYNTSLDAALAYDEAARALYG 111 79*****999.**********83....46***********************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence |
MKKRRRNRFT GTSCVAEILS KWKDQNNQLH TLNTQRVRKV PAKGSKKGCM TGKGGPENSH 60 CKYRGVRQRT WGKWVAEIRE PRRGCRLWLG TYNTSLDAAL AYDEAARALY GSYARVNLPE 120 SVVDSDAQQC KRPKSETLES TTSSETALEA DNLKPVAVKE EIKNIGSQPS SEDPLSTDSR 180 NPVLTEEPVE EMPFDMFHID EILGFANGCE DAVGSSLHSS GSNLQSPSPV QKADTMCWSL 240 DQMDYGFPDL GFLDPSFFSD LP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 4e-35 | ERF family protein |