PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028547574.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | ERF | ||||||||
Protein Properties | Length: 279aa MW: 31067.1 Da PI: 6.5134 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.7 | 1.3e-17 | 78 | 128 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIr+p+ r r +lg++ t +Aa a+++a+++l+g XP_028547574.1 78 CKYRGVRQRT-WGKWVAEIREPR----RgCRLWLGTYNTSLDAALAYDEAARALYG 128 79*****999.**********83....46***********************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence |
MVASCEIELI RPMKLLLVKK RRRNRFTGTS CVAEILSKWK DQNNQLHTLN TQRVRKVPAK 60 GSKKGCMTGK GGPENSHCKY RGVRQRTWGK WVAEIREPRR GCRLWLGTYN TSLDAALAYD 120 EAARALYGSY ARVNLPESVV DSDAQQCKRP KSETLESTTS SETALEADNL KPVAVKEEIK 180 NIGSQPSSED PLSTDSRNPV LTEEPVEEMP FDMFHIDEIL GFANGCEDAV GSSLHSSGSN 240 LQSPSPVQKA DTMCWSLDQM DYGFPDLGFL DPSFFSDLP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 2e-34 | ERF family protein |