PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028547531.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 345aa    MW: 39274.4 Da    PI: 7.0191
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028547531.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS28.81.5e-09229281556
            GRAS   5 LlecAeavssgdle.laqalLarlselaspdgdpmqRlaayfteALaarlars 56 
                     Ll+c + v++++++ +  ++L+++++++ p+g +  Rla+yf+++L+arla++
  XP_028547531.1 229 LLHCTQIVANNNNNlRGYEFLKQIRQHSFPHGHASMRLAHYFANGLEARLAGT 281
                     99********98886889********************************994 PP
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    
MRHPNLESTE KPFYELIGEK YPSSPDQFPL YSSPSLETLD SNKSHNSNNS GIQSFHDNSE  60
FSEYQNYQIP LSQSSLSFVN GNGNDLLFKT LPTIQFEKGI EEAKKFLPSI DKLAVKVGEI  120
NLTLLQNPIK QERRQKNLRL DDSGFEETRR INQLAFSYEE PVIPLVMFDD VLLCSCERFP  180
QDVSAIREKV FTEAGKDSKN SIPNESGVSR KSRQKKQLKE EVVDFNIFLL HCTQIVANNN  240
NNLRGYEFLK QIRQHSFPHG HASMRLAHYF ANGLEARLAG TERAVLLKQI RMLNAGYVWI  300
DTDWLSSILD SSGSADPATM SLIQGAIVLR PHTPYSNIKQ IFLSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.14e-24GRAS family protein