PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028547509.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 217aa MW: 25143.9 Da PI: 8.728 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 38.9 | 1.1e-12 | 12 | 53 | 4 | 45 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 en + r t+ R++g+ KKA ELS LC+++v+v fss+ + XP_028547509.1 12 ENCRARRATYLTRLKGLKKKAGELSLLCGVDVLVASFSSELN 53 88999******************************9998743 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence |
MGRAKLSIKY QENCRARRAT YLTRLKGLKK KAGELSLLCG VDVLVASFSS ELNTLEFWPE 60 NNTPEFCRIR ERYLKESAHY EENGKITEQQ ISCQPKPSPS FPLPTFLEEK AAIKIKLLEV 120 RERIDFLQRQ STEVLERLQP QQAIFMPSQQ QPQYLHLHQR LSPFFHCISP QLSVDFSIPL 180 QQDLLHLQQP TPFAQSLPPR EQPKQVSPSL TPEQLFS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.1 | 3e-11 | M-type_MADS family protein |