PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028547502.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NAC

Protein Properties

Length: 628aa MW: 70868.1 Da PI: 6.8479

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028547502.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	91.9	1.1e-28	13	155	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tk 79 lp+G++F+Ptd el+ e+L+ +v + + ++e+i+++d i++++P++Lp vk++ ++ +fF++++++yatg +k+r+ + XP_028547502.1 13 LPAGVKFDPTDVELL-EHLAGNVGAGMskahIFIDEFIPTLDgdqgICYTHPENLP-GVKKDGSSAHFFHRTSNAYATGCKKRRKirneysesEE 105 799**********.899999887773444333445666656677******.67788899**************985666666555 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+k+v++ +g l+g kk++v+y g+ k+ k +Wvmh+y+l XP_028547502.1 106 RVRWHKTGKTKPVVE-SGVLKGWKKIMVLYrsLGKGCKPDKDNWVMHQYHL 155 889********.999*******5447888999*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 628 aa Download sequence
MSELQVSLDW PGLPAGVKFD PTDVELLEHL AGNVGAGMSK AHIFIDEFIP TLDGDQGICY 60 THPENLPGVK KDGSSAHFFH RTSNAYATGC KKRRKIRNEY SESEERVRWH KTGKTKPVVE 120 SGVLKGWKKI MVLYRSLGKG CKPDKDNWVM HQYHLGTNED EKDGELVVSK VFYQQHTKHV 180 GSGEAEILPD ELDSSNIKNC PRTPKTTAPQ PPRFKMNSLR EADQHDHLPL PVQEKRPEEE 240 SMPSPFPIIC LKDEHNGSAC WADESQAIQE PETEKIYESL LCHEVLFPFT SIGGSSPQFD 300 HLEIADGNKE QLKRDANTDD GFSCLEDIDI DTPSDFHLSM RNLGSLNQFL GIHAVKTNSG 360 ILLHQQHYAK AIVERAGMTQ SKPVSTPIAC KITTSSTSQE PFSNPQLYRH IIGSLQYLTP 420 TRPDIQFAVH QLCQHMQHPL NQHFDALKRL LRFINGTTNT GIQFHSQDLT LRGYVDADWA 480 SNSLDRKSIS GHCHFMGNSL ISWQVKKQNT IARSSTEAEY RALAFATAEI IWLRQLLEDF 540 HIPQTNPTVI YCDNTSAIAL ANNPVFYART KHIEVDCHFI REHIRNKIIT VHHICSADQL 600 ADFFTKALPT TRFQLMANKL TAALQPQV

Sequence ? help Back to Top

Protein Sequence Length: 628 aa Download sequence

MSELQVSLDW PGLPAGVKFD PTDVELLEHL AGNVGAGMSK AHIFIDEFIP TLDGDQGICY  60
THPENLPGVK KDGSSAHFFH RTSNAYATGC KKRRKIRNEY SESEERVRWH KTGKTKPVVE  120
SGVLKGWKKI MVLYRSLGKG CKPDKDNWVM HQYHLGTNED EKDGELVVSK VFYQQHTKHV  180
GSGEAEILPD ELDSSNIKNC PRTPKTTAPQ PPRFKMNSLR EADQHDHLPL PVQEKRPEEE  240
SMPSPFPIIC LKDEHNGSAC WADESQAIQE PETEKIYESL LCHEVLFPFT SIGGSSPQFD  300
HLEIADGNKE QLKRDANTDD GFSCLEDIDI DTPSDFHLSM RNLGSLNQFL GIHAVKTNSG  360
ILLHQQHYAK AIVERAGMTQ SKPVSTPIAC KITTSSTSQE PFSNPQLYRH IIGSLQYLTP  420
TRPDIQFAVH QLCQHMQHPL NQHFDALKRL LRFINGTTNT GIQFHSQDLT LRGYVDADWA  480
SNSLDRKSIS GHCHFMGNSL ISWQVKKQNT IARSSTEAEY RALAFATAEI IWLRQLLEDF  540
HIPQTNPTVI YCDNTSAIAL ANNPVFYART KHIEVDCHFI REHIRNKIIT VHHICSADQL  600
ADFFTKALPT TRFQLMANKL TAALQPQV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	95	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	2e-72	NAC family protein