PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028547497.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NAC

Protein Properties

Length: 676aa MW: 76212.6 Da PI: 7.263

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028547497.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	91.7	1.3e-28	61	203	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tk 79 lp+G++F+Ptd el+ e+L+ +v + + ++e+i+++d i++++P++Lp vk++ ++ +fF++++++yatg +k+r+ + XP_028547497.1 61 LPAGVKFDPTDVELL-EHLAGNVGAGMskahIFIDEFIPTLDgdqgICYTHPENLP-GVKKDGSSAHFFHRTSNAYATGCKKRRKirneysesEE 153 799**********.899999887773444333445666656677******.67788899**************985666666555 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+k+v++ +g l+g kk++v+y g+ k+ k +Wvmh+y+l XP_028547497.1 154 RVRWHKTGKTKPVVE-SGVLKGWKKIMVLYrsLGKGCKPDKDNWVMHQYHL 203 889********.999*******5447888999*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence
MDNRKKAPKP FYSQPLGFPK ILGFVAVMMG LGCWQMQKLS EKTGAVADFI VFKVSLDWPG 60 LPAGVKFDPT DVELLEHLAG NVGAGMSKAH IFIDEFIPTL DGDQGICYTH PENLPGVKKD 120 GSSAHFFHRT SNAYATGCKK RRKIRNEYSE SEERVRWHKT GKTKPVVESG VLKGWKKIMV 180 LYRSLGKGCK PDKDNWVMHQ YHLGTNEDEK DGELVVSKVF YQQHTKHVGS GEAEILPDEL 240 DSSNIKNCPR TPKTTAPQPP RFKMNSLREA DQHDHLPLPV QEKRPEEESM PSPFPIICLK 300 DEHNGSACWA DESQAIQEPE TEKIYESLLC HEVLFPFTSI GGSSPQFDHL EIADGNKEQL 360 KRDANTDDGF SCLEDIDIDT PSDFHLSMRN LGSLNQFLGI HAVKTNSGIL LHQQHYAKAI 420 VERAGMTQSK PVSTPIACKI TTSSTSQEPF SNPQLYRHII GSLQYLTPTR PDIQFAVHQL 480 CQHMQHPLNQ HFDALKRLLR FINGTTNTGI QFHSQDLTLR GYVDADWASN SLDRKSISGH 540 CHFMGNSLIS WQVKKQNTIA RSSTEAEYRA LAFATAEIIW LRQLLEDFHI PQTNPTVIYC 600 DNTSAIALAN NPVFYARTKH IEVDCHFIRE HIRNKIITVH HICSADQLAD FFTKALPTTR 660 FQLMANKLTA ALQPQV

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence

MDNRKKAPKP FYSQPLGFPK ILGFVAVMMG LGCWQMQKLS EKTGAVADFI VFKVSLDWPG  60
LPAGVKFDPT DVELLEHLAG NVGAGMSKAH IFIDEFIPTL DGDQGICYTH PENLPGVKKD  120
GSSAHFFHRT SNAYATGCKK RRKIRNEYSE SEERVRWHKT GKTKPVVESG VLKGWKKIMV  180
LYRSLGKGCK PDKDNWVMHQ YHLGTNEDEK DGELVVSKVF YQQHTKHVGS GEAEILPDEL  240
DSSNIKNCPR TPKTTAPQPP RFKMNSLREA DQHDHLPLPV QEKRPEEESM PSPFPIICLK  300
DEHNGSACWA DESQAIQEPE TEKIYESLLC HEVLFPFTSI GGSSPQFDHL EIADGNKEQL  360
KRDANTDDGF SCLEDIDIDT PSDFHLSMRN LGSLNQFLGI HAVKTNSGIL LHQQHYAKAI  420
VERAGMTQSK PVSTPIACKI TTSSTSQEPF SNPQLYRHII GSLQYLTPTR PDIQFAVHQL  480
CQHMQHPLNQ HFDALKRLLR FINGTTNTGI QFHSQDLTLR GYVDADWASN SLDRKSISGH  540
CHFMGNSLIS WQVKKQNTIA RSSTEAEYRA LAFATAEIIW LRQLLEDFHI PQTNPTVIYC  600
DNTSAIALAN NPVFYARTKH IEVDCHFIRE HIRNKIITVH HICSADQLAD FFTKALPTTR  660
FQLMANKLTA ALQPQV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	143	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	8e-72	NAC family protein