PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020706096.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 27801.6 Da    PI: 8.9152
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020706096.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.55.5e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLC+aeva+iifs++gklye++s
  XP_020706096.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCEAEVALIIFSNRGKLYEFCS 59
                    79***********************************************96 PP

2K-box102.65.1e-34821739100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     + +++++s+qqe+ kLk+++e Lqr+qR+llGedL++Ls keL+qLe+qL+ slk+iRs++++++l+q+ +lq++e++l e+nk+L+++lee
  XP_020706096.1  82 VISRETQSSQQEYLKLKARVEALQRSQRNLLGEDLGPLSSKELEQLERQLDASLKQIRSTRTQFMLDQLADLQRREQMLCEANKTLKRRLEE 173
                     557789**********************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCE AEVALIIFSN RGKLYEFCSS  60
SSMLKTLERY QKCSYGAPEA NVISRETQSS QQEYLKLKAR VEALQRSQRN LLGEDLGPLS  120
SKELEQLERQ LDASLKQIRS TRTQFMLDQL ADLQRREQML CEANKTLKRR LEESNQASSQ  180
HVWDPSTAHA MGYDRQSAQP HGDAFYHPLE CEPTLHIGYH SDLSIAPMAA PNVNNYMPPG  240
WLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-114MIKC_MADS family protein