PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020705913.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | LSD | ||||||||
Protein Properties | Length: 168aa MW: 17633.7 Da PI: 8.7734 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 38 | 2.7e-12 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L YPrGA +V+Ca+C+ V XP_020705913.1 7 CSGCRIPLLYPRGAANVCCAICNMV 31 ***********************98 PP | |||||||
2 | zf-LSD1 | 41.2 | 2.7e-13 | 44 | 68 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC++lL+Y rGA+ VRC++C+t+ XP_020705913.1 44 CGGCQILLMYARGASTVRCSCCNTI 68 ***********************97 PP | |||||||
3 | zf-LSD1 | 45.2 | 1.5e-14 | 82 | 106 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C V XP_020705913.1 82 CGHCRTTLMYPYGAPSVKCAVCRYV 106 **********************876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence |
MQSQLICSGC RIPLLYPRGA ANVCCAICNM VTAVPSADMA QIICGGCQIL LMYARGASTV 60 RCSCCNTINV ARAANQVAQL SCGHCRTTLM YPYGAPSVKC AVCRYVTNVG MSNTRPSTPI 120 PPTTAPVSIS ATRKPSNNVT VVVENPMSVN ENGKLVSNVV VGVTTDKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.2 | 2e-65 | LSD family protein |