PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020705771.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Trihelix

Protein Properties

Length: 295aa MW: 33107.7 Da PI: 10.3462

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020705771.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.6	8.9e-15	18	106	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ e+ +L++a ++ +l+rg+l++++W+ev++++ + r r+ +qCk++++ l+k+yk +k ++++ s++p++++l+ XP_020705771.1 18 CWSEGETSVLVDAWGDRFLDLNRGNLRQKQWQEVADAVnarpgAGRRPPRTDVQCKNRIDTLKKKYKIEKVKISDGAY--GSQWPFYSRLD 106 7***********************************88877667778999**************99999844..447***997 PP

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence
MEVPSRPPNP AMPYREDCWS EGETSVLVDA WGDRFLDLNR GNLRQKQWQE VADAVNARPG 60 AGRRPPRTDV QCKNRIDTLK KKYKIEKVKI SDGAYGSQWP FYSRLDMLIG STVPAKKPPR 120 SSSSPPLALP LPSYRKGLPL PMAAAVRAVE SLPKEKRPAA VGLSADDSFF GRNYTVAAAA 180 AAAAAEVESG SSSKLSASST ERSRSTRDRS ARGLRKKRKG REGGGIGELA RVIEWFTDIY 240 ENVEVEKQRH MIELEKERME FIKGLEFQRM QMFVDTQVQM EKIKRARRSD ADIYS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	2e-29	Trihelix family protein