PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020705700.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 319aa MW: 35360.2 Da PI: 6.4359

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020705700.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.7	1e-13	88	139	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A++++k+L+ XP_020705700.1 88 QRMTHIAVERNRRRQMNEHLAMLRSLMPES---YIQRGDQASIVGGAIDFVKELE 139 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence
MSFEMLSSSF VVYDTISATP EPHHQQPLSF LFDAGGGCLS PESAMLGSLQ PPAGPQPAPL 60 PSCAGAQGKR KRRRRPRSCK NKEEAETQRM THIAVERNRR RQMNEHLAML RSLMPESYIQ 120 RGDQASIVGG AIDFVKELEH LLQSLEAQKR TIEQTQRANA SINDSGGGLM RTDDETEQPP 180 FAQFFAYPQY NWCHPRHEYP SPAPEIRSPA VADIEVTLIE THASLRILSP TRPRQLIQLV 240 TGLQALRLSI LHLNVTTLDS MVLYSLSVKV EEGCSLSTVD EIAAAVHRML SLIEADSISA 300 VHQVFLDELS SSPNPPLSF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	74	KRKRRR
2	69	75	KRKRRRR
3	70	74	RKRRR
4	70	77	RKRRRRPR
5	89	100	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	2e-77	bHLH family protein