PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020705608.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NAC

Protein Properties

Length: 601aa MW: 67204.8 Da PI: 5.9868

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020705608.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.2	3.4e-49	9	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp GfrFhPtdeelv++yLk k++g+ ++ evi+e+d++k+ePw+Lp k ++++++ew+fF++ d+ky++g+r nrat +gyWkatgkd+++ XP_020705608.1 9 LPLGFRFHPTDEELVNHYLKGKITGRLRSEVEVIPEIDVCKCEPWELPdKsLIQSDDHEWFFFAPIDRKYPNGHRYNRATGAGYWKATGKDRTIR 103 699*********************988889***********96447788999*********************************** PP NAM 94 sk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ +++g+kktLvf+ grap+g +t W+mheyr XP_020705608.1 104 SRaatPLRVIGMKKTLVFHCGRAPNGLRTCWIMHEYRT 141 85444455**************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence
MTVVPLKSLP LGFRFHPTDE ELVNHYLKGK ITGRLRSEVE VIPEIDVCKC EPWELPDKSL 60 IQSDDHEWFF FAPIDRKYPN GHRYNRATGA GYWKATGKDR TIRSRAATPL RVIGMKKTLV 120 FHCGRAPNGL RTCWIMHEYR TTEPEFDCGE QGGYMLYRLF KKQEGKGLKC NDDDMVNRGY 180 SQTNSKSSPA DIEDCSATVE QSSTDLDSCG EQSLNQIIKE QPAAKLRRLA EKVDCSRDST 240 WEPKDGHCNA FANVGVANNN ADVIGPTVDP LISIVEQFGE PYNEQTIEQS FPNVDSPIPY 300 SDWSMYNMSY EPDPIDEVLK AMLVRQDKDG EDDAQLILAD ELLARPIIGN SQGFARESVS 360 SSELESQKGG AYTELKNLQA SIPHINSSHE TSAAGLRYAV LCDQTMFPQY DSVGYDIFST 420 NSNAMSLQGD FIVSSDRIIQ ETVTGNFDGP NLTVNSIRSE SAKQLQSNSM ATKQGQAKRR 480 LRLQKKMSVG VPQSREAELS NGNGDHRMKK EITEMMEESQ LAIGEENVEK FKDISIHGKA 540 KLRLTPKLSY GSSGTLKSTS FSPSNVWKAG SMIAYMRRLA LLVVLALLFV FLWRSVAVHV 600 I

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence

MTVVPLKSLP LGFRFHPTDE ELVNHYLKGK ITGRLRSEVE VIPEIDVCKC EPWELPDKSL  60
IQSDDHEWFF FAPIDRKYPN GHRYNRATGA GYWKATGKDR TIRSRAATPL RVIGMKKTLV  120
FHCGRAPNGL RTCWIMHEYR TTEPEFDCGE QGGYMLYRLF KKQEGKGLKC NDDDMVNRGY  180
SQTNSKSSPA DIEDCSATVE QSSTDLDSCG EQSLNQIIKE QPAAKLRRLA EKVDCSRDST  240
WEPKDGHCNA FANVGVANNN ADVIGPTVDP LISIVEQFGE PYNEQTIEQS FPNVDSPIPY  300
SDWSMYNMSY EPDPIDEVLK AMLVRQDKDG EDDAQLILAD ELLARPIIGN SQGFARESVS  360
SSELESQKGG AYTELKNLQA SIPHINSSHE TSAAGLRYAV LCDQTMFPQY DSVGYDIFST  420
NSNAMSLQGD FIVSSDRIIQ ETVTGNFDGP NLTVNSIRSE SAKQLQSNSM ATKQGQAKRR  480
LRLQKKMSVG VPQSREAELS NGNGDHRMKK EITEMMEESQ LAIGEENVEK FKDISIHGKA  540
KLRLTPKLSY GSSGTLKSTS FSPSNVWKAG SMIAYMRRLA LLVVLALLFV FLWRSVAVHV  600
I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	7e-66	NAC family protein