PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020705313.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family NF-YC
Protein Properties Length: 274aa    MW: 29997.1 Da    PI: 5.2467
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020705313.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.99.5e-56811851102
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql +fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl
  XP_020705313.1  81 QLLAFWSNQmheIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAITRTDIFDFL 175
                     6789****988889********************************************************************************* PP

           NF-YC  93 vdivprdelk 102
                     vdivprdelk
  XP_020705313.1 176 VDIVPRDELK 185
                     *******975 PP

Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MEQSSQPPPS LMGIVPGAAQ IAYAAPPYAP PMVTGASPVI GAMPSTQSLV GASPFSTAQH  60
QLSYQQVQQF HHHQQQQQQQ QLLAFWSNQM HEIEQTTDFK NHSLPLARIK KIMKADEDVR  120
MISAEAPVIF AKACEMFILE LTLRSWIHTE ENKRRTLQKN DIAAAITRTD IFDFLVDIVP  180
RDELKEDGLG IPRAALPGMG SPSDTVPYYY VPGPSQVAGA GMIMGKPVDQ TTAAGAAAMY  240
ASASQAHPMA YVWQQPTVQS TQLQPEQDQM PDGD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.12e-75NF-YC family protein