PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020705313.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | NF-YC | ||||||||
Protein Properties | Length: 274aa MW: 29997.1 Da PI: 5.2467 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 177.9 | 9.5e-56 | 81 | 185 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql +fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl XP_020705313.1 81 QLLAFWSNQmheIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAITRTDIFDFL 175 6789****988889********************************************************************************* PP NF-YC 93 vdivprdelk 102 vdivprdelk XP_020705313.1 176 VDIVPRDELK 185 *******975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence |
MEQSSQPPPS LMGIVPGAAQ IAYAAPPYAP PMVTGASPVI GAMPSTQSLV GASPFSTAQH 60 QLSYQQVQQF HHHQQQQQQQ QLLAFWSNQM HEIEQTTDFK NHSLPLARIK KIMKADEDVR 120 MISAEAPVIF AKACEMFILE LTLRSWIHTE ENKRRTLQKN DIAAAITRTD IFDFLVDIVP 180 RDELKEDGLG IPRAALPGMG SPSDTVPYYY VPGPSQVAGA GMIMGKPVDQ TTAAGAAAMY 240 ASASQAHPMA YVWQQPTVQS TQLQPEQDQM PDGD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 154 | 160 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.1 | 2e-75 | NF-YC family protein |