PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020704557.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 370aa MW: 40224.1 Da PI: 6.7621

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020704557.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.8	1.2e-18	62	107	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v+++G+++W++Iar ++ gR++k+c++rw + XP_020704557.1 62 KGPWSPEEDAILSRLVAKFGPRNWSLIARGVP-GRSGKSCRLRWCNQ 107 79****************************.*********985 PP
2	Myb_DNA-binding	53.2	7.1e-17	114	158	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+eEd +++ a+ +G++ W+ Iar + gRt++ +k++w++ XP_020704557.1 114 RKPFTEEEDRIIIAAHSVHGNK-WAVIARLLE-GRTDNAIKNHWNST 158 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MASDADLMAV EETPPPTTEK LASSSPPLPP PPSPSASIEC SGSQAEGFGM KSAAASREDR 60 VKGPWSPEED AILSRLVAKF GPRNWSLIAR GVPGRSGKSC RLRWCNQLDP HVKRKPFTEE 120 EDRIIIAAHS VHGNKWAVIA RLLEGRTDNA IKNHWNSTLR RKCIEIESSK RAPCDGQEDN 180 SADNLEKTKG SSEETQSFGD VKAFTMTEGR DISSRESLSH HSEDRVNAVG PEFKQPATIF 240 RPVARLSAFS PYNPGFLASR SSPNASVFRT CIGDCKLLEN ILWEPPHVPA RCGHGCCGSK 300 TTRDENSSSC SLLGPEFVEF VESPPILNHE IASMATELSN VAWLNSGLQT GIYNTCRINP 360 STSSCTASTC

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MASDADLMAV EETPPPTTEK LASSSPPLPP PPSPSASIEC SGSQAEGFGM KSAAASREDR  60
VKGPWSPEED AILSRLVAKF GPRNWSLIAR GVPGRSGKSC RLRWCNQLDP HVKRKPFTEE  120
EDRIIIAAHS VHGNKWAVIA RLLEGRTDNA IKNHWNSTLR RKCIEIESSK RAPCDGQEDN  180
SADNLEKTKG SSEETQSFGD VKAFTMTEGR DISSRESLSH HSEDRVNAVG PEFKQPATIF  240
RPVARLSAFS PYNPGFLASR SSPNASVFRT CIGDCKLLEN ILWEPPHVPA RCGHGCCGSK  300
TTRDENSSSC SLLGPEFVEF VESPPILNHE IASMATELSN VAWLNSGLQT GIYNTCRINP  360
STSSCTASTC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	3e-84	MYB family protein