PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020703920.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C3H
Protein Properties Length: 209aa    MW: 22531.6 Da    PI: 10.2258
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020703920.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.6e-0882104325
                     S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                     t+lC+ +     Ck+Gd+C+F+H
  XP_020703920.2  82 TRLCNKYNTAEGCKFGDKCHFSH 104
                     99********************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MYSHDATRKR GRPDATNGNG NVPSLKRSKE IESNQSSLGS KSKPCTNTDN QPKKYYSPPP  60
LRNHLIGPTS LSDGPATPVT NTRLCNKYNT AEGCKFGDKC HFSHEERELG RLIHSALAST  120
IIGKGGVNTK QVCHLIGAKL FIREHETNAN LRNIKLEGTF DQIKQAIGMV RELIVNISSS  180
AAPMPLKPAC VFGAGGGNGG LGSNFKTKM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-27C3H family protein