PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020703872.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | C2H2 | ||||||||
Protein Properties | Length: 228aa MW: 24137.2 Da PI: 8.1431 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00033 | 98 | 120 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+Fs+ L H +H XP_020703872.1 98 YKCKTCDKCFSSFQALGGHRASH 120 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 14.2 | 0.00013 | 154 | 176 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg Fs+ L H+r+H XP_020703872.1 154 HQCSVCGAEFSSGQALGGHMRRH 176 79********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence |
MVHSISSSSI GESSSPSPSP SPVIFKRKRT KRYRAFAPPP STAATATAAS SASSNTTEED 60 HDMADCLMLL AQGPPVPFNE AAAPLLKPTG PAGVAIVYKC KTCDKCFSSF QALGGHRASH 120 KKPKLTPFET ELLGTMAKPI ANSSSSAGGK KRTHQCSVCG AEFSSGQALG GHMRRHRPAL 180 LLENKLETNR TENKVLLLDL NLPAPADDDP FAADDDDDGA SRSQLLEY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 154 | KKRTH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 6e-34 | C2H2 family protein |