PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020703313.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

GeBP

Protein Properties

Length: 385aa MW: 42562.6 Da PI: 9.0092

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020703313.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	81.8	9.9e-26	97	191	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 +f+r+w e+Dei +LqGl+ + ++g d++ fy+ +++s+s +++sql+eK+rrL+kK++++ ++ +g++ps ++hd++ ++ls ++W XP_020703313.1 97 KFHRIWPESDEIRFLQGLLGC-WSQGLVFPRDLNIFYDRFSESMSQPYTRSQLSEKLRRLRKKYRTMAGRIVRGQDPSRLSQHDRDLLHLSTRLW 190 699****************.677988888************************************************************** PP DUF573 97 g 97 + XP_020703313.1 191 D 191 8 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MATLTPLNIK SAARKLPIKR KNPSQPQAQP ASNSHSVSIS TPNPNPNANP NPIPLSSYPP 60 TLPSSRNNTY EDDDPDAEYD DEEPEDEGGD SKQPPFKFHR IWPESDEIRF LQGLLGCWSQ 120 GLVFPRDLNI FYDRFSESMS QPYTRSQLSE KLRRLRKKYR TMAGRIVRGQ DPSRLSQHDR 180 DLLHLSTRLW DPSNASTSPF SAPDAVAAGS AGNKRRRPNP RAPASRTRNS SSPPQVIVAL 240 ESAPFLPSNP PLALPSSSSP IKDNRECVDT PAPIGHKGSI DGTDFAASPE EIAKEELPAH 300 PGTTSVEAKQ TGAKHLAIKS VLDVLDGALN EVRSTLSVQR IISSDGTLEQ GSEMKTLLKR 360 WQEHRLAELD LLAQRWRLTI EQKAK

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MATLTPLNIK SAARKLPIKR KNPSQPQAQP ASNSHSVSIS TPNPNPNANP NPIPLSSYPP  60
TLPSSRNNTY EDDDPDAEYD DEEPEDEGGD SKQPPFKFHR IWPESDEIRF LQGLLGCWSQ  120
GLVFPRDLNI FYDRFSESMS QPYTRSQLSE KLRRLRKKYR TMAGRIVRGQ DPSRLSQHDR  180
DLLHLSTRLW DPSNASTSPF SAPDAVAAGS AGNKRRRPNP RAPASRTRNS SSPPQVIVAL  240
ESAPFLPSNP PLALPSSSSP IKDNRECVDT PAPIGHKGSI DGTDFAASPE EIAKEELPAH  300
PGTTSVEAKQ TGAKHLAIKS VLDVLDGALN EVRSTLSVQR IISSDGTLEQ GSEMKTLLKR  360
WQEHRLAELD LLAQRWRLTI EQKAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	1e-14	GeBP family protein