PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020703297.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 337aa MW: 37321.3 Da PI: 7.5882

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020703297.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.8	1.4e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l++++k++G g+W+ +r g++R++k+c++rw +yl XP_020703297.1 14 KGPWTPEEDEKLIEYIKKHGHGSWRHLPRNAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54	3.9e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+ l+++++ +lG++ W++I+ +++ gRt++++k++w+++l XP_020703297.1 67 RGKFSEEEEGLIIHLHSMLGNK-WSLISTKLP-GRTDNEIKNHWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence
MGRSPCCDEV GVKKGPWTPE EDEKLIEYIK KHGHGSWRHL PRNAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SEEEEGLIIH LHSMLGNKWS LISTKLPGRT DNEIKNHWNT HLKKKLLLMG 120 IDPVTHRRRA DLELLANLPN LLSCCNSSTR MANSWDSTLQ LQADAANLVQ VQILQGLLQV 180 LISSSPNSNA SPNLNMNNLL AGSSLAPLRN IADILQANRQ LEALLNGSFG LAHGSIPSAS 240 TIQMPNSYQA LPLQNQPKMN GNENQQLLFH SNTPSLVSAS PENTTSVSLK QEQIISNEIS 300 AANSESSTPI DPWDALNLSD PNGADLGWKE ILEQISW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	4e-77	MYB family protein