PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020703209.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ERF
Protein Properties Length: 262aa    MW: 28562.4 Da    PI: 7.4212
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020703209.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.37.8e-18101151155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +gr+ AeIr p     + kr +lg+f+taeeAa+ ++ a+++++g
  XP_020703209.1 101 KKFRGVRQRP-WGRFSAEIRNP----LCgKRLWLGTFDTAEEAAAVYDLAALQIKG 151
                     59********.**********7....378***********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MNRTIREKRI RGIAGAGPGP RNKTILTPAA GKSGRILRIS FADADATDSS SSEEDGPTWR  60
RRPKRFVHEL PIGNSLPARR KPHQRLTLPP ADPPPGGGER KKFRGVRQRP WGRFSAEIRN  120
PLCGKRLWLG TFDTAEEAAA VYDLAALQIK GAKAVTNFPV GKIKYELESS DAPPTPAAVL  180
TVAEPAAPLT SPTSVLQFDE DELPFGEWLG YGDVDAFGFS VVETPLCLSE SFIPKSANWE  240
KIEFEELDDL SLLESAALPS FG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-17ERF family protein