PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020703152.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MYB | ||||||||
Protein Properties | Length: 242aa MW: 27111.2 Da PI: 4.6918 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.5e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l +++++G g+W++ ++ g+ R++k+c++rw +yl XP_020703152.1 16 RGAWTPEEDMRLMAYIRKFGHGNWRALPKQAGLLRCGKSCRLRWINYL 63 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 46.4 | 9.2e-15 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE+e ++++ +lG++ W++Ia+ ++ gRt++++k+ w+++l XP_020703152.1 69 RGNFSIEEEETVIKLHGLLGNK-WSKIASSLP-GRTDNEIKNVWNTHL 114 89********************.*********.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence |
MGRGRAPCCE KVGLNRGAWT PEEDMRLMAY IRKFGHGNWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDIKRG NFSIEEEETV IKLHGLLGNK WSKIASSLPG RTDNEIKNVW NTHLKKRLKS 120 NEQSSSSPTP TIVSTANADQ DTPASSSSSE TTSISIPSNL DFDDFNDSID EILAIDIEPE 180 VWNDVIVTEE ADAGEKRNWL AYLEEELGLF DDNGGGDDEN KMVEMVVVGE GDPVTSYFHK 240 SY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 120 | LKKRLKS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 5e-70 | MYB family protein |