PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020702936.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 184aa MW: 20857.9 Da PI: 10.2249

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020702936.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	3.8e-05	73	93	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H XP_020702936.1 73 CEICNKGFQRDQNLQLHRRGH 93 *******************88 PP
2	zf-C2H2	13.2	0.00026	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + XP_020702936.1 147 WKCDKCSKKYAVQSDWKAHSKIC 169 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence
MKGLIIPPQL QLLEENMSNL TSASGEASVS SNNQNPNPPS SKKKRNLPGN PDPEAEVIAL 60 SPTSLMATNR FLCEICNKGF QRDQNLQLHR RGHNLPWKLK QRTSKEVRKK VYICPEVTCV 120 HHDASRALGD LTGIKKHFSR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYRCDCGT 180 LFSR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	110	KLKQRTSKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	2e-84	C2H2 family protein