PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020702933.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 711aa MW: 77775 Da PI: 5.7864 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.2 | 1.9e-20 | 34 | 89 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+ +++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k XP_020702933.1 34 KKRYHRHTQHQIQEMEAFFKDCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 89 688999***********************************************999 PP | |||||||
2 | START | 230.2 | 5.9e-72 | 225 | 447 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 ela +a++el+++a+++ep+W++ e++n++e++q+f+++ + ++ea+r+++vv+m +++lve+l+d + qW++++ + +t XP_020702933.1 225 ELAVAAMEELIRMAQLGEPLWSSPCldganEILNEEEYVQNFPRGIGpkpfgLKSEASRETAVVIMSHVNLVEILMDPN-QWSTMFSgivsRGMT 318 57899*****************9999******************999********************************.*************** PP EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS START 82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169 lev+s+g galq+m+ae+q++splvp R+++fvRy++q+++g+w++vdvS+d ++ + ++R++++pSg+li++++ng+skv+wveh XP_020702933.1 319 LEVLSTGvagnynGALQVMTAEFQVPSPLVPtRESYFVRYCKQHPDGTWAVVDVSLDGLRPST---ALMRCRRRPSGCLIQEMPNGYSKVIWVEH 410 ************************************************************977...6**************************** PP EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 v++++r++h+++++lv+sg+a+gak+wv+tl+rqce+ XP_020702933.1 411 VEVDDRSVHSIYKPLVNSGIAFGAKRWVSTLDRQCER 447 ***********************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 711 aa Download sequence |
MIRTREDDFE SKSGSDNIEG ASGDEQDPNQ RPRKKRYHRH TQHQIQEMEA FFKDCPHPDD 60 KQRKELSREL GLEPLQVKFW FQNKRTQMKT QHDRQENSQL RSDNDKLRNE NLRYKEALSN 120 ASCPNCGGPA ALGEMSFDEH HLRIENARLR EEIDRISGIA AKYVGKPMNS YSLLSPTLPS 180 RSPLDLGVGG FGLHSPTMGG EMFSAAELLR TVAGQPEVDK PMVIELAVAA MEELIRMAQL 240 GEPLWSSPCL DGANEILNEE EYVQNFPRGI GPKPFGLKSE ASRETAVVIM SHVNLVEILM 300 DPNQWSTMFS GIVSRGMTLE VLSTGVAGNY NGALQVMTAE FQVPSPLVPT RESYFVRYCK 360 QHPDGTWAVV DVSLDGLRPS TALMRCRRRP SGCLIQEMPN GYSKVIWVEH VEVDDRSVHS 420 IYKPLVNSGI AFGAKRWVST LDRQCERLAS VMASSIPSGE IGVITTPEGR KSMLKLAERM 480 VLSFCGGVSA STTHQWTTLS GSGAEDVRVM TRKSVDDPGR PPGIVLNAAT SFWLPVSPKR 540 VFDFLRDESS RSEWDILSNG GVVQEMAHIA NGRDHGNCVS LLRVNQSTNS NQSNMLILQE 600 SCTDPTGSYV IYAPVDVVAM NVVLNGGDPD YVALLPSGFA ILPDGSNGVQ GGGSGIGEVG 660 SGGSLLTVAF QILVDSIPTA KLSLGSVATV NSLIACTVER IKAAVSGENP Q |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | HD-ZIP family protein |