PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020702932.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HD-ZIP
Protein Properties Length: 766aa    MW: 83613.7 Da    PI: 5.758
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020702932.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.12e-2090145156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++e+e++F+ +++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  XP_020702932.1  90 KKRYHRHTQHQIQEMEAFFKDCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 145
                     688999***********************************************999 PP
2START2306.8e-722815031206
                     HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                     ela +a++el+++a+++ep+W++       e++n++e++q+f+++ +      ++ea+r+++vv+m +++lve+l+d + qW++++     + +t
  XP_020702932.1 281 ELAVAAMEELIRMAQLGEPLWSSPCldganEILNEEEYVQNFPRGIGpkpfgLKSEASRETAVVIMSHVNLVEILMDPN-QWSTMFSgivsRGMT 374
                     57899*****************9999******************999********************************.*************** PP

                     EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                     lev+s+g      galq+m+ae+q++splvp R+++fvRy++q+++g+w++vdvS+d  ++ +    ++R++++pSg+li++++ng+skv+wveh
  XP_020702932.1 375 LEVLSTGvagnynGALQVMTAEFQVPSPLVPtRESYFVRYCKQHPDGTWAVVDVSLDGLRPST---ALMRCRRRPSGCLIQEMPNGYSKVIWVEH 466
                     ************************************************************977...6**************************** PP

                     EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     v++++r++h+++++lv+sg+a+gak+wv+tl+rqce+
  XP_020702932.1 467 VEVDDRSVHSIYKPLVNSGIAFGAKRWVSTLDRQCER 503
                     ***********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    
MPAGIMIPSR HVPSMIGRNS SALTLAQTNI LEGQQLPLQH QLVDLSTQAT TTAESEMIRT  60
REDDFESKSG SDNIEGASGD EQDPNQRPRK KRYHRHTQHQ IQEMEAFFKD CPHPDDKQRK  120
ELSRELGLEP LQVKFWFQNK RTQMKTQHDR QENSQLRSDN DKLRNENLRY KEALSNASCP  180
NCGGPAALGE MSFDEHHLRI ENARLREEID RISGIAAKYV GKPMNSYSLL SPTLPSRSPL  240
DLGVGGFGLH SPTMGGEMFS AAELLRTVAG QPEVDKPMVI ELAVAAMEEL IRMAQLGEPL  300
WSSPCLDGAN EILNEEEYVQ NFPRGIGPKP FGLKSEASRE TAVVIMSHVN LVEILMDPNQ  360
WSTMFSGIVS RGMTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRESY FVRYCKQHPD  420
GTWAVVDVSL DGLRPSTALM RCRRRPSGCL IQEMPNGYSK VIWVEHVEVD DRSVHSIYKP  480
LVNSGIAFGA KRWVSTLDRQ CERLASVMAS SIPSGEIGVI TTPEGRKSML KLAERMVLSF  540
CGGVSASTTH QWTTLSGSGA EDVRVMTRKS VDDPGRPPGI VLNAATSFWL PVSPKRVFDF  600
LRDESSRSEW DILSNGGVVQ EMAHIANGRD HGNCVSLLRV NSTNSNQSNM LILQESCTDP  660
TGSYVIYAPV DVVAMNVVLN GGDPDYVALL PSGFAILPDG SNGVQGGGSG IGEVGSGGSL  720
LTVAFQILVD SIPTAKLSLG SVATVNSLIA CTVERIKAAV SGENPQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein