PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020702645.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB
Protein Properties Length: 295aa    MW: 33080.9 Da    PI: 7.0257
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020702645.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.7e-123077247
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     g+WT++E +l+ +a + +  +   +W+++a++++ g+t +++ s++q++
   XP_020702645.1 30 GNWTQQENKLFENALAHFDEDmpdRWEKVAEMIP-GKTVEDVMSHYQDL 77
                     89********************************.************86 PP
2Myb_DNA-binding46.77.3e-15137181347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+++++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
   XP_020702645.1 137 PWTEEEHKRFLIGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 181
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MMTNSWMEVI SPYPSYLSNS KWILGERKSG NWTQQENKLF ENALAHFDED MPDRWEKVAE  60
MIPGKTVEDV MSHYQDLEED VTCIEAGLIP FPGYSSSSFT LDWENDHGFD GLRQACFVGG  120
KRLGGRLADH ERKKGVPWTE EEHKRFLIGL KKYGKGDWRN ISRNFVVTRT PTQVASHAQK  180
YFIRLNSGTK DKRRASIHDI TTVSLEDNRS PSPSQPSVAT MQSSSASAPA ASEQFSMVVD  240
SKQHSEAASV FSPTNGNQFI QSSYGILPYG MKLQAQSSFH RNLNGSIGGQ NGVLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-92MYB family protein