PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020702434.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 311aa MW: 35504.9 Da PI: 6.5147

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020702434.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.7	1e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl XP_020702434.1 14 KGPWSPEEDAKLKSYIEEHGTGnNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	38.6	2.6e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ ++ G++ W+ Ia+ ++ gRt++++k++w++ XP_020702434.1 69 GGFSEEEDRIICNLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE EHGTGNNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIRHGG FSEEEDRIIC NLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR 120 RRDLPPSQFR QLAAANPKLK DEGVNSNPNE CPQTLTASAL ERLQLHIQLQ SLHSPFSFYN 180 TTSLWPNNKL LQTINISTDS IATTASPLKD FQQNDIINSM IANTQENIGI PSSYSNNPEA 240 DFQNLLYGYK ENYQLTQVDC LKGIMNDEQK AIDWWESNEF EEKFPSSSWD SASVLQPDTV 300 VIQDYELGYD Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	2e-82	MYB family protein