PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020702371.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Trihelix

Protein Properties

Length: 850aa MW: 94301.6 Da PI: 8.334

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020702371.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.4	8.9e-19	759	839	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e++ Li+ r ++++r+++ + +++lWeevs+ m+++g+ r+p qCk+ w +l ++y++ ++ ek r +++pyf+ ++ XP_020702371.1 759 KWKPEEIKWLIKERGDLNDRFQTVRGRMALWEEVSSSMSSHGIIRTPAQCKSLWASLVQKYEESRKDEKFR-----KSWPYFSAVD 839 7*****************************************************************986.....57**9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 850 aa Download sequence
MASLNVLYSL CNFRLPRRPN LPNNFISCCF GPPALAKGAQ GSKSPRKRSR TDGAGKSMED 60 SIQRKLEQFY EGSNGPPIRV LPIGGLGEIG MNCMLVGNYD RYILIDAGVM FPDYDELGVQ 120 KIIPDTSFIQ RWSHKIEAVV ITHGHEDHIG ALPWVIPALD SHAPVYASSF TMELIKKRLK 180 ESGIFIPSRL KVFKCRKKFL AGPFEVEPLR VTHSIPDCCG LVLRCKDGTI FHTGDWKIDE 240 SPLDGNVFDR EALEELSKEG VTLMMSDSTN VLSPGRTLSE AIVAESLLRH ISSAKGRVIT 300 TQFASNIHRI GSVKAAADLT GRKLVFVGMS LRTYLDAAFR DGKAPMDPST LVKVEEIDAY 360 PPNGLLIVTT GSQAEPRAAL NLASFGGSHS LKLTKDDVIL YSAKVIPGNE TRVMKMFNRI 420 SDLGSTVVMG KNELLHTSGH GYRDELEEVL RIVKPQHFLP IHGELLFLKE HELVGKSTGI 480 KHTAVIKNGE MLGVSHLRNR RVLSNGFALL GKEDLQLMYS DGDKAFGTSA ELCIDERLRI 540 AFDGIIIVCM EILRPQSING SSQACLKGKI RISTRCLWLD KGKLLDALYK AAHAALSSCP 600 VNCPLFHMER IVAEVLRKVV RKYCSRRPEV IAIAVENTVG VLSEELRERI AGKTYDNFDL 660 SAINQLSDMH MRKVSGSRFD EDAPDIMRKL LEAGAEGNTD DDFDVEKSDA EVSLSESEDL 720 EVENISSVEH LASSKASGRE LMKVSEAKTG SLKSGKRNKW KPEEIKWLIK ERGDLNDRFQ 780 TVRGRMALWE EVSSSMSSHG IIRTPAQCKS LWASLVQKYE ESRKDEKFRK SWPYFSAVDK 840 ILSAPQAAAK

Sequence ? help Back to Top

Protein Sequence Length: 850 aa Download sequence

MASLNVLYSL CNFRLPRRPN LPNNFISCCF GPPALAKGAQ GSKSPRKRSR TDGAGKSMED  60
SIQRKLEQFY EGSNGPPIRV LPIGGLGEIG MNCMLVGNYD RYILIDAGVM FPDYDELGVQ  120
KIIPDTSFIQ RWSHKIEAVV ITHGHEDHIG ALPWVIPALD SHAPVYASSF TMELIKKRLK  180
ESGIFIPSRL KVFKCRKKFL AGPFEVEPLR VTHSIPDCCG LVLRCKDGTI FHTGDWKIDE  240
SPLDGNVFDR EALEELSKEG VTLMMSDSTN VLSPGRTLSE AIVAESLLRH ISSAKGRVIT  300
TQFASNIHRI GSVKAAADLT GRKLVFVGMS LRTYLDAAFR DGKAPMDPST LVKVEEIDAY  360
PPNGLLIVTT GSQAEPRAAL NLASFGGSHS LKLTKDDVIL YSAKVIPGNE TRVMKMFNRI  420
SDLGSTVVMG KNELLHTSGH GYRDELEEVL RIVKPQHFLP IHGELLFLKE HELVGKSTGI  480
KHTAVIKNGE MLGVSHLRNR RVLSNGFALL GKEDLQLMYS DGDKAFGTSA ELCIDERLRI  540
AFDGIIIVCM EILRPQSING SSQACLKGKI RISTRCLWLD KGKLLDALYK AAHAALSSCP  600
VNCPLFHMER IVAEVLRKVV RKYCSRRPEV IAIAVENTVG VLSEELRERI AGKTYDNFDL  660
SAINQLSDMH MRKVSGSRFD EDAPDIMRKL LEAGAEGNTD DDFDVEKSDA EVSLSESEDL  720
EVENISSVEH LASSKASGRE LMKVSEAKTG SLKSGKRNKW KPEEIKWLIK ERGDLNDRFQ  780
TVRGRMALWE EVSSSMSSHG IIRTPAQCKS LWASLVQKYE ESRKDEKFRK SWPYFSAVDK  840
ILSAPQAAAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein