PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020702289.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

GRF

Protein Properties

Length: 369aa MW: 40387.7 Da PI: 7.8882

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020702289.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79.2	3.8e-25	76	120	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ XP_020702289.1 76 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKHVET 120 79****************************************997 PP
2	QLQ	62	1.6e-21	15	50	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Q+++L++Q+l++KyL+a+ PvPpeLl++i++ XP_020702289.1 15 PFTASQWEELEHQALIFKYLIAGIPVPPELLLPIRR 50 9*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MNSTAAAVGV GCRPPFTASQ WEELEHQALI FKYLIAGIPV PPELLLPIRR GYETMAARFY 60 HHPALGYCSY YGKKLDPEPG RCRRTDGKKW RCSKDAYPDS KYCERHMHRG RNRSRKHVET 120 PQALSQSQSS CSTVTSLAPT SLGSSGSGSG SGATASIGGG SCSGGSFHSL PLHSIPSMHH 180 QVSGIGAATS SHLSIDPSSY GNVISKDFRY VHGSKSGLDE RGFYSEAPGS ARVLGMDSAL 240 DSSWRLLSSP VSTFPLSKER ENSFLHGSYP QLQPLQELGQ VTISSLPKQH QQHQHSFFGT 300 DYGSTEPPIK TEQPLRPFFD EWPGTRDSWS DLEDERTNRN SFSTTQLSMS IPMSSSDFST 360 TSSRSPNDD

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MNSTAAAVGV GCRPPFTASQ WEELEHQALI FKYLIAGIPV PPELLLPIRR GYETMAARFY  60
HHPALGYCSY YGKKLDPEPG RCRRTDGKKW RCSKDAYPDS KYCERHMHRG RNRSRKHVET  120
PQALSQSQSS CSTVTSLAPT SLGSSGSGSG SGATASIGGG SCSGGSFHSL PLHSIPSMHH  180
QVSGIGAATS SHLSIDPSSY GNVISKDFRY VHGSKSGLDE RGFYSEAPGS ARVLGMDSAL  240
DSSWRLLSSP VSTFPLSKER ENSFLHGSYP QLQPLQELGQ VTISSLPKQH QQHQHSFFGT  300
DYGSTEPPIK TEQPLRPFFD EWPGTRDSWS DLEDERTNRN SFSTTQLSMS IPMSSSDFST  360
TSSRSPNDD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	1e-49	GRF family protein