PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020702253.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB_related
Protein Properties Length: 275aa    MW: 30415.8 Da    PI: 10.0214
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020702253.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.65.1e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE++ l  +v ++G g W+tI +         +R+  ++k++w++ 
   XP_020702253.1  5 KQKWTSEEEDALRAGVDKHGAGKWRTIQKDPEfchclATRSNIDLKDKWRNM 56
                     79************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MGAPKQKWTS EEEDALRAGV DKHGAGKWRT IQKDPEFCHC LATRSNIDLK DKWRNMIVSA  60
TGQGIREKSR TPKSKDQSTT QSSSQSPRVQ APANVEKQPT VESTKAPHDA KIPSRYNAII  120
MEALTVLHEP NGSEIGAICK YIEQRMEIPS GFRRLLGSKL RRLVAQNKIV KGPKGYQLKE  180
PSFATKTPTQ KQKEPANRSK PPQASGFTKP LDPVEEAAIT AAYKIADAEA KAFLASEAVK  240
EAEKISKMAE ETDSLLMLAK EIFERCVRGE IVTMA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.22e-49MYB_related family protein