PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020702244.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MYB | ||||||||
Protein Properties | Length: 310aa MW: 35463.9 Da PI: 7.4098 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.8 | 2.2e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l +++ +G g+W++++r+ g+ R++k+c++rw +yl XP_020702244.1 14 RGLWSPEEDEKLTKYISTYGHGCWSSVPRRAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.4 | 1.9e-14 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++ E+ l++++++ lG++ W+ Ia+++ gRt++++k++w++ XP_020702244.1 67 RGSFSPYEETLIIELHRILGNR-WAQIAKHLT-GRTDNEVKNFWNS 110 899*******************.********9.***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence |
MGHHSCCNKQ KVRRGLWSPE EDEKLTKYIS TYGHGCWSSV PRRAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SPYEETLIIE LHRILGNRWA QIAKHLTGRT DNEVKNFWNS TIKKKLIAQA 120 VEGLSLPNLS NQIPPPQDLL PLRSFEFHTS HVQDQFQPAY NHPSIAAQIY NSQGLQPNME 180 NPAPTQPLQL SGSYSSILPS YPQQQQLHQH NHHEPNTFFD FVDPLRFHTE SKGGLIDTKI 240 GIAMDNQQVI NDQEWFSSLS SMPYLESSYG YSSLMEYMYV LTGSHDQSLA VVACDDLNSN 300 NTSIQPYLFP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.2 | 2e-75 | MYB family protein |