PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020702194.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 490aa MW: 54561.1 Da PI: 6.9724

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020702194.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50	5.3e-16	307	352	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRd+iN+++ L+el+P++ K +Ka++L +A+eY+ksLq XP_020702194.2 307 HNLSERRRRDKINEKMRALQELIPHC-----NKSDKASMLDEAIEYLKSLQ 352 9**********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MNDCVPDWKM EDDSRPFYGL PVTNEKKCMG PENELTELLR RNRHGVLHGQ TNHKALPAIF 60 ESKQTQKPES LLKCGDSVVN SSNFIDEEEA TSWFQYSLDN SMDKELSEFF YGMPTAEIIS 120 TDKAMKEDSN VCTKKSCFHP HDNVMLSPKS SLGDSATVVK FSNHRKPRKA DLVSENRKFC 180 EEASSSEAVV GMADSSSLRK ILSSVCGSNQ AQNEAEVTHA LSSVKGAKDS LSRSTLDHLE 240 ANTYEPAITS SSGGSRRSST KHGLKRKGRN AEESEGQSEE AEYESAEANK AAQRPASGRR 300 SRSAEIHNLS ERRRRDKINE KMRALQELIP HCNKSDKASM LDEAIEYLKS LQLQLQIMWM 360 GNGVAPMLFP SIQQYVSCMG NAMNHHSMTS IPNPVQPPKV SSDIQSTTLG TSISNQPHVC 420 PPQGPNSINF ATQMHNFHIP EQYSSYFGFP QMQMPPQVMN ICTYGPQTMQ QNQMVAAVDK 480 QQHTNNKSSI

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MNDCVPDWKM EDDSRPFYGL PVTNEKKCMG PENELTELLR RNRHGVLHGQ TNHKALPAIF  60
ESKQTQKPES LLKCGDSVVN SSNFIDEEEA TSWFQYSLDN SMDKELSEFF YGMPTAEIIS  120
TDKAMKEDSN VCTKKSCFHP HDNVMLSPKS SLGDSATVVK FSNHRKPRKA DLVSENRKFC  180
EEASSSEAVV GMADSSSLRK ILSSVCGSNQ AQNEAEVTHA LSSVKGAKDS LSRSTLDHLE  240
ANTYEPAITS SSGGSRRSST KHGLKRKGRN AEESEGQSEE AEYESAEANK AAQRPASGRR  300
SRSAEIHNLS ERRRRDKINE KMRALQELIP HCNKSDKASM LDEAIEYLKS LQLQLQIMWM  360
GNGVAPMLFP SIQQYVSCMG NAMNHHSMTS IPNPVQPPKV SSDIQSTTLG TSISNQPHVC  420
PPQGPNSINF ATQMHNFHIP EQYSSYFGFP QMQMPPQVMN ICTYGPQTMQ QNQMVAAVDK  480
QQHTNNKSSI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	311	316	ERRRRD
2	312	317	RRRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43010.2	3e-41	bHLH family protein