PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020702118.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 300aa    MW: 32916.2 Da    PI: 4.5089
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020702118.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.11.7e-161152344
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    i n+  r +t+ kRr+g+lKK +ELSvLC++ ++ ii+s++ 
  XP_020702118.1 11 IANDAARRITLRKRRHGLLKKVYELSVLCNVPACAIIYSPQE 52
                    899************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MARKKTKLAY IANDAARRIT LRKRRHGLLK KVYELSVLCN VPACAIIYSP QETEPEVWPS  60
TGEAAELLNR FNATEGLGKE NNMMNQEKFL LKQIEKLRGQ VSRIMADNDD LAGEILLLQC  120
MVGRSVCDLG TDELGLVGRA VGRRIEAVES RILMLRSNEV ETQTLPLLLP APAMDEAAEA  180
RILMLRSSEV ETQALPLLLP APAMNEAAEA RILMLRSSEV ETQALPPLLP APALDEAMQD  240
RILMLRSSEV ETQALPLLLP APAMEETVVG GVDGWTDGVF GWDDGLFSGC SNLFQPDLGV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKTKLAYIANDAARRITLRKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.21e-28M-type_MADS family protein