PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020701937.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 730aa MW: 83833.9 Da PI: 7.3321

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020701937.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	42.8	7.4e-14	39	73	1	33
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 C Cgt++ Tp++Rrgp+g++tLCnaCG+ + k+ XP_020701937.1 39 CLRCGTSSkaTPHMRRGPEGPRTLCNACGIAWTKT 73 788*****************************996 PP
2	FAR1	86.2	5.1e-27	113	198	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA +GFsvrks+s ks++n + +rtfvCs+eg+r+++k + ++ +r+r+etr+gC a++++k + +g+++vt++ eHnH+ XP_020701937.1 113 EFYNKYAGFIGFSVRKSSSDKSSENI-TRSRTFVCSREGFRKDKKGA-KEVKRPRPETRIGCPARMTIKITPTGNYRVTEFIAEHNHQ 198 6*******************6666.999*********9999.999**********************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence
MHLPVTSGDM DYGENAHRQE QDPEVQNDGD DGMEGPLRCL RCGTSSKATP HMRRGPEGPR 60 TLCNACGIAW TKTLNKQGKM RKVIESDIHR EDGTAQMVPE IDMEFESEDK AYEFYNKYAG 120 FIGFSVRKSS SDKSSENITR SRTFVCSREG FRKDKKGAKE VKRPRPETRI GCPARMTIKI 180 TPTGNYRVTE FIAEHNHQPA PPSSTHLLRS QRITMEVQAA DAELSDDSGA TPRSANESMG 240 RQVGGFCNVN FLPSDYKNYL SSKRMKAMQM GDAGSVLKYL QNMQLNSQSF FYAIQVDEDD 300 KLTNIFWADE RSVVDFNCFG DVVCFDTTFK INGYGRPFTP FLGVNHHKQT IIFGAALLYD 360 ESTESFKWLF ETFKIAMRGK QPKTILTDLS ITLSSAIAAV WPGTNHRLCE WHVYQNAAKH 420 LNQVFQGSKT FAKDFSRCVY DYEEEEDFLL AWRTMLEKYD LQNNEWLCKL FEDREKWALA 480 YNRHIFCADI KSTLRNESLS SVLKKYLSPQ LDLLSFFKHY ERVVEEHRYS ELQADFHASQ 540 SFPRIPPSKM LRQAANLYTP VVFEIFRREF EMFMDCMLFS CGEVDTISDY KVAVTEKPKE 600 HYVRFDSSDC SVACNCKKFE FMGIQCCHAL KVLDFRNIKE LPLKYFLKRW TKEAKMGKKK 660 DGQLATNESE PKSPTSTSMH APMALYGQHQ GFHGLNHFNQ DSPASDLHHP FHTNSHLGQE 720 FSAQQPQFTL

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence

MHLPVTSGDM DYGENAHRQE QDPEVQNDGD DGMEGPLRCL RCGTSSKATP HMRRGPEGPR  60
TLCNACGIAW TKTLNKQGKM RKVIESDIHR EDGTAQMVPE IDMEFESEDK AYEFYNKYAG  120
FIGFSVRKSS SDKSSENITR SRTFVCSREG FRKDKKGAKE VKRPRPETRI GCPARMTIKI  180
TPTGNYRVTE FIAEHNHQPA PPSSTHLLRS QRITMEVQAA DAELSDDSGA TPRSANESMG  240
RQVGGFCNVN FLPSDYKNYL SSKRMKAMQM GDAGSVLKYL QNMQLNSQSF FYAIQVDEDD  300
KLTNIFWADE RSVVDFNCFG DVVCFDTTFK INGYGRPFTP FLGVNHHKQT IIFGAALLYD  360
ESTESFKWLF ETFKIAMRGK QPKTILTDLS ITLSSAIAAV WPGTNHRLCE WHVYQNAAKH  420
LNQVFQGSKT FAKDFSRCVY DYEEEEDFLL AWRTMLEKYD LQNNEWLCKL FEDREKWALA  480
YNRHIFCADI KSTLRNESLS SVLKKYLSPQ LDLLSFFKHY ERVVEEHRYS ELQADFHASQ  540
SFPRIPPSKM LRQAANLYTP VVFEIFRREF EMFMDCMLFS CGEVDTISDY KVAVTEKPKE  600
HYVRFDSSDC SVACNCKKFE FMGIQCCHAL KVLDFRNIKE LPLKYFLKRW TKEAKMGKKK  660
DGQLATNESE PKSPTSTSMH APMALYGQHQ GFHGLNHFNQ DSPASDLHHP FHTNSHLGQE  720
FSAQQPQFTL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	162	166	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-129	FAR1 family protein