PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020701837.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB
Protein Properties Length: 272aa    MW: 31108 Da    PI: 6.5016
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020701837.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l + + ++G g+W+++++  g+ R++k+c++rw +yl
   XP_020701837.1 14 KGLWSPEEDEKLFNHIIRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding48.22.5e-1567111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++++eE++l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++ 
   XP_020701837.1  67 RGSFSQEEEDLIIGLHEVLGNR-WSQIAAQLP-GRTDNEIKNFWNSC 111
                      899*******************.*********.***********975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MGRHSCCLKQ KLRKGLWSPE EDEKLFNHII RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SQEEEDLIIG LHEVLGNRWS QIAAQLPGRT DNEIKNFWNS CLKKKLRQRG  120
IDPTTHKPLN EIEREQEKIN SDNSVHENLP IKPIFNPFPT LEFNPSEDQT GANIILYDQF  180
HSSFISAPGF CEYSNLMDVS GNYSYGSSSS NTSNWNCNIR SDMNNLVCNE ALNWRSESKL  240
ETIVGTQWPS LSQDPSVACF DVPRGEFDAD FL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118LKKKLRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.19e-83MYB family protein