PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020701812.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HSF
Protein Properties Length: 268aa    MW: 30862.9 Da    PI: 7.6882
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020701812.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1132e-35251172103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y++++d+++++++sw e+ +sfvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F kg k+ll++
  XP_020701812.2  25 FLIKTYQLVDDPSTDHIVSWGEEATSFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKIVIDR---------WEFANDFFIKGGKNLLSE 110
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k++
  XP_020701812.2 111 IHRRKTS 117
                     ****987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MAFFVEKSRE MVVSIESQKS VPTPFLIKTY QLVDDPSTDH IVSWGEEATS FVVWRPPEFA  60
RDILPNYFKH NNFSSFVRQL NTYGFRKIVI DRWEFANDFF IKGGKNLLSE IHRRKTSQAS  120
SQYNSPTPFH YHDEISSWIE PPILSLPNRD ENTFISALSE DNERLRRKNS YLLSELANVK  180
KLYNDIIYFI QSHVSPMPAE QSLMSTKPCR LVEIDPSDHQ CSKSNAILDG SSKQSEVPNS  240
TVKLFGVSLH GKKRLHWEIG GGKGCERE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-82HSF family protein