PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020701779.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB
Protein Properties Length: 326aa    MW: 37379.8 Da    PI: 6.8439
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020701779.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-1767112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+d+v+q+G+ +W++Ia+++  gR++k+c++rw++ 
   XP_020701779.1  67 RGHWRPAEDAKLKDLVAQYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 112
                      899*****************************.***********996 PP
2Myb_DNA-binding55.71.1e-17119162146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++++T++E+e+l+ a++++G++ W++I+r ++ gRt++ +k++w+ 
   XP_020701779.1 119 KKAFTEDEEERLLSAHRLYGNK-WALISRLFP-GRTDNAVKNHWHV 162
                      679*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MEFSPSSRPP LFHTVEREGR RNEAVLILEE QGAKQSSDFE GLSEMSGRIE EHEGAELESR  60
HSKLCARGHW RPAEDAKLKD LVAQYGPQNW NLIAEKLEGR SGKSCRLRWF NQLDPRINKK  120
AFTEDEEERL LSAHRLYGNK WALISRLFPG RTDNAVKNHW HVIMARRQRE QSSVYRRRKT  180
FSSSKVFDKR MEVKCSNHAC SAESTISSNR DEPLCISRGF TAHGFLTRYN FPHLHQQIDY  240
LVEPDGKLVT RRKEGYERLF DSSIDLQQAS PLIVVPGIHH YGFSDSNSEA SATDSVINNG  300
FMPEDAELED EKISLPFIDF LGVGDT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.18e-73MYB family protein