PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020701603.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 570aa    MW: 63192.4 Da    PI: 4.6725
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020701603.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3497.5e-1072085703374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     + Ll+cA+ ++++   +a +++ ++++las  gdp++R+a yf+eAL++rl++        +++ + +   ++e +  +++f++++P+  f hlt
  XP_020701603.1 208 KSLLDCARIIDTEP-DQAAKTIDHIRDLASDLGDPTERVAYYFAEALNSRLTG--------CSAPDFR---EEEIALCYRAFNDACPYSMFVHLT 290
                     689*****999965.5566789*******************************........3444444...6788999***************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     aNqaIlea+e++e +HiiDf+isqG+QW+aLlqaLa+Rp g+p ++Ri g+ +++ g   +++l +tg+rL +fA+ l+++fef++ v + ++dl
  XP_020701603.1 291 ANQAILEATESAEIIHIIDFGISQGIQWAALLQALATRPTGKPsRIRISGIPAASLGgsPATSLAATGNRLLDFARLLDLDFEFEP-VLHPVQDL 384
                     ***************************************766659********9988999**************************.799***** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +  ++rv+pgEa+aVn+ lql+++l   ++++++ ++v++l ks++Pkvv++ e e+++n+  F+erf +al+y++a+fds+e++ +r+s+er+ 
  XP_020701603.1 385 TAASFRVEPGEAVAVNFTLQLYTIL---GDSDEPVNRVIRLAKSVRPKVVTLGEYECSLNRIGFVERFGNALRYFAAVFDSVESSRGRDSDERAR 476
                     *************************...55555566*********************************************************** PP

            GRAS 285 vErellgreivnvvace.gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee..sgslvlgWkdrpLvsvSaWr 374
                     +Er++lg++i   v  e g++rr+r+e +ekWr  +e +G++ vpls++a +qaklll +++ s  y++ ++   g l l W+d pL++vS+Wr
  XP_020701603.1 477 IERVILGPRILYTVGPEdGRQRRMRMEAKEKWRVIMEGCGLEMVPLSNYAISQAKLLLWNYDySPKYSLLDSssTGMLSLAWEDLPLFTVSSWR 570
                     **************9873677*****************************************9999*998542256666**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    
MAYMCADSGN LMAIAQQVIK QKQQQQQRHQ HQQQNQEPVI PAIDVASSDG DPFAAVPPQW  60
GNQHQQTPPI RDHFPFAMPE PTFHDPFAAG VLGFPPQTHI DHAPFRISEF DSDEWMESLI  120
GESPTESSEI MADVWQGSDL PPIFPDAFAS CSTAISLPSQ ASTSDLDRVV FPDSRKIVAP  180
HSLSFDPPPP PQPKKDAVDS KSPPLLFKSL LDCARIIDTE PDQAAKTIDH IRDLASDLGD  240
PTERVAYYFA EALNSRLTGC SAPDFREEEI ALCYRAFNDA CPYSMFVHLT ANQAILEATE  300
SAEIIHIIDF GISQGIQWAA LLQALATRPT GKPSRIRISG IPAASLGGSP ATSLAATGNR  360
LLDFARLLDL DFEFEPVLHP VQDLTAASFR VEPGEAVAVN FTLQLYTILG DSDEPVNRVI  420
RLAKSVRPKV VTLGEYECSL NRIGFVERFG NALRYFAAVF DSVESSRGRD SDERARIERV  480
ILGPRILYTV GPEDGRQRRM RMEAKEKWRV IMEGCGLEMV PLSNYAISQA KLLLWNYDYS  540
PKYSLLDSSS TGMLSLAWED LPLFTVSSWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-146GRAS family protein