PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020701469.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | NF-YA | ||||||||
Protein Properties | Length: 252aa MW: 27874.6 Da PI: 10.0279 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.1 | 5.2e-32 | 85 | 140 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQy++I++RR++Rak+e ++kl +k rkpylheSRh+hA+rRpRg+gGrF XP_020701469.1 85 VPVYVNAKQYNGIVRRRKARAKAEMKSKL-TKIRKPYLHESRHQHAMRRPRGCGGRF 140 59***************************.**************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence |
MDVVILPSSR LFRDSGKGQK NQPHSTTISL QSPPDFQGRF ELGLGQSVVC SNYPYIDQCY 60 GLFATYGAQA MHGRMLLPLN MTADVPVYVN AKQYNGIVRR RKARAKAEMK SKLTKIRKPY 120 LHESRHQHAM RRPRGCGGRF LNTKKDANVQ TENKPGNPNN GMRPTRLATS PSSEILQSDS 180 GNPNSASCGS SISRSEVTSM YSQGENDHFH LIEHLRPSLY HPLSSMIVGD HSSVIPSKWG 240 TAADGCCDLL KV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.2 | 6e-39 | NF-YA family protein |